Tailoring plant-associated microbial inoculants in agriculture: a roadmap for successful application

MM Saad, AA Eida, H Hirt - Journal of Experimental Botany, 2020 - academic.oup.com
Plants are now recognized as metaorganisms which are composed of a host plant
associated with a multitude of microbes that provide the host plant with a variety of essential …

The plant microbiome at work

K Schlaeppi, D Bulgarelli - Molecular Plant-microbe …, 2015 - Am Phytopath Society
Plants host distinct microbial communities on and inside their tissues designated the plant
microbiota. Microbial community profiling enabled the description of the phylogenetic …

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

E Kopylova, L Noé, H Touzet - Bioinformatics, 2012 - academic.oup.com
Motivation: The application of next-generation sequencing (NGS) technologies to RNAs
directly extracted from a community of organisms yields a mixture of fragments …

Genetic innovations in animal–microbe symbioses

J Perreau, NA Moran - Nature Reviews Genetics, 2022 - nature.com
Animal hosts have initiated myriad symbiotic associations with microorganisms and often
have maintained these symbioses for millions of years, spanning drastic changes in …

Growing unculturable bacteria

EJ Stewart - Journal of bacteriology, 2012 - Am Soc Microbiol
The bacteria that can be grown in the laboratory are only a small fraction of the total diversity
that exists in nature. At all levels of bacterial phylogeny, uncultured clades that do not grow …

Present and future of culturing bacteria

J Overmann, B Abt, J Sikorski - Annual review of microbiology, 2017 - annualreviews.org
The cultivation of bacteria is highly biased toward a few phylogenetic groups. Many of the
currently underexplored bacterial lineages likely have novel biosynthetic pathways and …

MiSeq: a next generation sequencing platform for genomic analysis

RK Ravi, K Walton, M Khosroheidari - Disease gene identification …, 2018 - Springer
MiSeq, Illumina's integrated next generation sequencing instrument, uses reversible-
terminator sequencing-by-synthesis technology to provide end-to-end sequencing solutions …

Concepts and methods to access novel antibiotics from actinomycetes

JJ Hug, CD Bader, M Remškar, K Cirnski, R Müller - Antibiotics, 2018 - mdpi.com
Actinomycetes have been proven to be an excellent source of secondary metabolites for
more than half a century. Exhibiting various bioactivities, they provide valuable approved …

The multi-omics promise in context: from sequence to microbial isolate

J Gutleben, M Chaib De Mares… - Critical reviews in …, 2018 - Taylor & Francis
The numbers and diversity of microbes in ecosystems within and around us is unmatched,
yet most of these microorganisms remain recalcitrant to in vitro cultivation. Various high …

Analyses of intestinal microbiota: culture versus sequencing

A Hiergeist, J Gläsner, U Reischl, A Gessner - ILAR journal, 2015 - academic.oup.com
Analyzing human as well as animal microbiota composition has gained growing interest
because structural components and metabolites of microorganisms fundamentally influence …