Bioinformatic Genome Comparisons for Taxonomic and Phylogenetic Assignments Using Aeromonas as a Test Case
SM Colston, MS Fullmer, L Beka, B Lamy, JP Gogarten… - MBio, 2014 - Am Soc Microbiol
Prokaryotic taxonomy is the underpinning of microbiology, as it provides a framework for the
proper identification and naming of organisms. The “gold standard” of bacterial species …
proper identification and naming of organisms. The “gold standard” of bacterial species …
[HTML][HTML] Fluorescence in situ hybridization (FISH) and cell sorting of living bacteria
Despite the development of several cultivation methods, the rate of discovery of
microorganisms that are yet-to-be cultivated outpaces the rate of isolating and cultivating …
microorganisms that are yet-to-be cultivated outpaces the rate of isolating and cultivating …
[HTML][HTML] Genomics-informed isolation and characterization of a symbiotic Nanoarchaeota system from a terrestrial geothermal environment
Biological features can be inferred, based on genomic data, for many microbial lineages that
remain uncultured. However, cultivation is important for characterizing an organism's …
remain uncultured. However, cultivation is important for characterizing an organism's …
Gut metabotypes govern health effects of dietary polyphenols
S Bolca, T Van de Wiele, S Possemiers - Current opinion in biotechnology, 2013 - Elsevier
Polyphenols are thought to be responsible for some of the health effects conferred by a diet
rich in fruit and vegetables. Both the formation of bioactive polyphenol-derived metabolites …
rich in fruit and vegetables. Both the formation of bioactive polyphenol-derived metabolites …
Increasing phytoremediation efficiency and reliability using novel omics approaches
Phytoremediation is a cost-effective green alternative to traditional soil remediation
technologies, but has experienced varied success in practice. The recent omics revolution …
technologies, but has experienced varied success in practice. The recent omics revolution …
Oral biofilms: molecular analysis, challenges, and future prospects in dental diagnostics
Oral biofilms are functionally and structurally organized polymicrobial communities that are
embedded in an extracellular matrix of exopolymers on mucosal and dental surfaces. These …
embedded in an extracellular matrix of exopolymers on mucosal and dental surfaces. These …
How do species interactions affect evolutionary dynamics across whole communities?
TG Barraclough - Annual Review of Ecology, Evolution, and …, 2015 - annualreviews.org
Theories of how species evolve in changing environments mostly consider single species in
isolation or pairs of interacting species. Yet all organisms live in diverse communities …
isolation or pairs of interacting species. Yet all organisms live in diverse communities …
A new perspective on microbial landscapes within food production
NA Bokulich, ZT Lewis, K Boundy-Mills… - Current opinion in …, 2016 - Elsevier
Highlights•Microbes affect the quality and safety of food.•New DNA sequencing tools hold
great promise for studying microbial impacts on food.•Microbes in man-made environments …
great promise for studying microbial impacts on food.•Microbes in man-made environments …
In vivo fermentation of a Pleurotus eryngii polysaccharide and its effects on fecal microbiota composition and immune response
G Ma, BM Kimatu, L Zhao, W Yang, F Pei, Q Hu - Food & function, 2017 - pubs.rsc.org
A novel, homogeneous Pleurotus eryngii polysaccharide (PEP)(molecular weight 426 kDa,
purity 91.25±3.14%) which mainly consisted of glucose with β-type glycosidic linkages was …
purity 91.25±3.14%) which mainly consisted of glucose with β-type glycosidic linkages was …
Deprivation of dietary fiber in specific-pathogen-free mice promotes susceptibility to the intestinal mucosal pathogen Citrobacter rodentium
M Neumann, A Steimle, ET Grant, M Wolter… - Gut …, 2021 - Taylor & Francis
The change of dietary habits in Western societies, including reduced consumption of fiber, is
linked to alterations in gut microbial ecology. Nevertheless, mechanistic connections …
linked to alterations in gut microbial ecology. Nevertheless, mechanistic connections …