Mining museums for historical DNA: advances and challenges in museomics

CJ Raxworthy, BT Smith - Trends in Ecology & Evolution, 2021 - cell.com
Historical DNA (hDNA), obtained from museum and herbarium specimens, has yielded
spectacular new insights into the history of organisms. This includes documenting historical …

Paleoenvironments shaped the exchange of terrestrial vertebrates across Wallace's Line

A Skeels, LM Boschman, IR McFadden, EM Joyce… - Science, 2023 - science.org
Faunal turnover in Indo-Australia across Wallace's Line is one of the most recognizable
patterns in biogeography and has catalyzed debate about the role of evolutionary and …

New approaches to species delimitation and population structure of anthozoans: Two case studies of octocorals using ultraconserved elements and exons

KL Erickson, A Pentico, AM Quattrini… - Molecular Ecology …, 2021 - Wiley Online Library
As coral populations decline worldwide in the face of ongoing environmental change,
documenting their distribution, diversity and conservation status is now more imperative than …

Museomics of tree squirrels: a dense taxon sampling of mitogenomes reveals hidden diversity, phenotypic convergence, and the need of a taxonomic overhaul

EF de Abreu-Jr, SE Pavan, MTN Tsuchiya… - BMC evolutionary …, 2020 - Springer
Abstract Background Tree squirrels (Sciuridae, Sciurini), in particular the highly diverse
Neotropical lineages, are amongst the most rapidly diversifying branches of the mammal …

Performance of commonly requested destructive museum samples for mammalian genomic studies

MM McDonough, LD Parker… - Journal of …, 2018 - academic.oup.com
High-throughput sequencing methods have facilitated obtaining large amounts of data from
degraded DNA, thus resulting in a dramatic increase in destructive sampling requests to …

Molecular phylogeny of the aquatic beetle family Noteridae (Coleoptera: Adephaga) with an emphasis on data partitioning strategies

SM Baca, EFA Toussaint, KB Miller… - Molecular phylogenetics …, 2017 - Elsevier
The first molecular phylogenetic hypothesis for the aquatic beetle family Noteridae is
inferred using DNA sequence data from five gene fragments (mitochondrial and nuclear) …

A comparative analysis of extraction protocol performance on degraded mammalian museum specimens

MTR Hawkins, MFC Flores, M McGowen… - Frontiers in Ecology …, 2022 - frontiersin.org
The extraction of nucleic acids is one of the most routine procedures used in molecular
biology laboratories, yet kit performance may influence the downstream processing of …

Museomics and the holotype of a critically endangered cricetid rodent provide key evidence of an undescribed genus

S Castañeda-Rico, CW Edwards… - Frontiers in Ecology …, 2022 - frontiersin.org
Historical DNA obtained from voucher specimens housed in natural history museums
worldwide have allowed the study of elusive, rare or even extinct species that in many cases …

Ancient DNA from museum specimens and next generation sequencing help resolve the controversial evolutionary history of the critically endangered Puebla deer …

S Castañeda-Rico, L León-Paniagua… - Frontiers in Ecology …, 2020 - frontiersin.org
Key insights into the evolutionary history of recently extinct or critically endangered species
can be obtained through analysis of genomic data collected using high-throughput …

Evolutionary history and patterns of divergence in three tropical east Asian squirrels across the Isthmus of Kra

A Hinckley, MTR Hawkins, JE Maldonado… - Journal of …, 2023 - Wiley Online Library
Aim Understanding the biotic and abiotic mechanisms underlying the generation and
maintenance of biogeographic transitions represent long‐standing topics in evolutionary …