Nuclear compartments: an incomplete primer to nuclear compartments, bodies, and genome organization relative to nuclear architecture

AS Belmont - Cold Spring Harbor perspectives in biology, 2022 - cshperspectives.cshlp.org
This work reviews nuclear compartments, defined broadly to include distinct nuclear
structures, bodies, and chromosome domains. It first summarizes original cytological …

Lamina-associated domains: Tethers and looseners

SG Manzo, L Dauban, B van Steensel - Current Opinion in Cell Biology, 2022 - Elsevier
Lamina-associated domains (LADs) are large heterochromatic regions that are positioned at
the nuclear lamina (NL). A major question is how LAD–NL interactions are mediated and …

Off-the-shelf proximity biotinylation for interaction proteomics

I Santos-Barriopedro, G van Mierlo… - Nature …, 2021 - nature.com
Proximity biotinylation workflows typically require CRISPR-based genetic manipulation of
target cells. To overcome this bottleneck, we fused the TurboID proximity biotinylation …

The nuclear lamina

X Wong, AJ Melendez-Perez… - Cold Spring Harbor …, 2022 - cshperspectives.cshlp.org
Lamins interact with a host of nuclear membrane proteins, transcription factors, chromatin
regulators, signaling molecules, splicing factors, and even chromatin itself to form a nuclear …

Single-cell profiling of transcriptome and histone modifications with EpiDamID

FJ Rang, KL de Luca, SS de Vries, C Valdes-Quezada… - Molecular Cell, 2022 - cell.com
Recent advances in single-cell sequencing technologies have enabled simultaneous
measurement of multiple cellular modalities, but the combined detection of histone post …

Understanding 3D genome organization and its effect on transcriptional gene regulation under environmental stress in plant: a chromatin perspective

S Kumar, S Kaur, K Seem, S Kumar… - Frontiers in Cell and …, 2021 - frontiersin.org
The genome of a eukaryotic organism is comprised of a supra-molecular complex of
chromatin fibers and intricately folded three-dimensional (3D) structures. Chromosomal …

Scaffold, mechanics and functions of nuclear lamins

A Buxboim, R Kronenberg‐Tenga, S Salajkova… - FEBS …, 2023 - Wiley Online Library
Nuclear lamins are type‐V intermediate filaments that are involved in many nuclear
processes. In mammals, A‐and B‐type lamins assemble into separate physical meshwork …

Lamin C is required to establish genome organization after mitosis

X Wong, VE Hoskins, AJ Melendez-Perez, JC Harr… - Genome biology, 2021 - Springer
Background The dynamic 3D organization of the genome is central to gene regulation and
development. The nuclear lamina influences genome organization through the tethering of …

Choreography of lamina‐associated domains: structure meets dynamics

NS Alagna, TI Thomas, KL Wilson, KL Reddy - FEBS letters, 2023 - Wiley Online Library
Lamina‐associated domains are large regions of heterochromatin positioned at the nuclear
periphery. These domains have been implicated in gene repression, especially in the …

Protein kinase C activity modulates nuclear Lamin A/C dynamics in HeLa cells

CC Wesley, DV North, DL Levy - Scientific Reports, 2024 - nature.com
The nuclear lamina serves important functions in the nucleus, providing structural support to
the nuclear envelope and contributing to chromatin organization. The primary proteins that …