Heterocyclic modifications of oligonucleotides and antisense technology
P Herdewijn - Antisense and Nucleic Acid Drug Development, 2000 - liebertpub.com
Modification of the heterocyclic moiety of oligonucleotides has led to the discovery of potent
antisense compounds. This review describes the physicochemical factors that are …
antisense compounds. This review describes the physicochemical factors that are …
Structure and formation of Z-DNA and Z-RNA
Despite structural differences between the right-handed conformations of A-RNA and B-
DNA, both nucleic acids adopt very similar, left-handed Z-conformations. In contrast to their …
DNA, both nucleic acids adopt very similar, left-handed Z-conformations. In contrast to their …
Low dose dimethyl sulfoxide driven gross molecular changes have the potential to interfere with various cellular processes
Dimethyl sulfoxide (DMSO) is a small molecule with polar, aprotic and amphiphilic
properties. It serves as a solvent for many polar and nonpolar molecules and continues to be …
properties. It serves as a solvent for many polar and nonpolar molecules and continues to be …
The use of diaminopurine to investigate structural properties of nucleic acids and molecular recognition between ligands and DNA
C Bailly, MJ Waring - Nucleic acids research, 1998 - academic.oup.com
Diaminopurine (DAP) is an analogue of adenine which can be converted to nucleotides that
serve as substrates for incorporation into nucleic acids by polymerases in place of (d) AMP …
serve as substrates for incorporation into nucleic acids by polymerases in place of (d) AMP …
Molecular Mechanisms for the B− Z Transition in the Example of Poly [d (G− C)⊙ d (G− C)] Polymers. A Critical Review
MA Fuertes, V Cepeda, C Alonso, JM Pérez - Chemical reviews, 2006 - ACS Publications
One of the most important achievements in our understanding of the biochemistry of DNA is
our awareness that the double helix has considerable conformational flexibility. The concept …
our awareness that the double helix has considerable conformational flexibility. The concept …
Enthalpy–entropy compensation in biomolecular halogen bonds measured in DNA junctions
M Carter, AR Voth, MR Scholfield, B Rummel… - Biochemistry, 2013 - ACS Publications
Interest in noncovalent interactions involving halogens, particularly halogen bonds (X-
bonds), has grown dramatically in the past decade, propelled by the use of X-bonding in …
bonds), has grown dramatically in the past decade, propelled by the use of X-bonding in …
An A-DNA triplet code: thermodynamic rules for predicting A-and B-DNA.
B Basham, GP Schroth, PS Ho - Proceedings of the …, 1995 - National Acad Sciences
The ability to predict macromolecular conformations from sequence and thermodynamic
principles has long been coveted but generally has not been achieved. We show that …
principles has long been coveted but generally has not been achieved. We show that …
Diaminopurine in Nonenzymatic RNA Template Copying
In the RNA World before the emergence of an RNA polymerase, nonenzymatic template
copying would have been essential for the transmission of genetic information. However, the …
copying would have been essential for the transmission of genetic information. However, the …
G-quadruplex structure can be stable with only some coordination sites being occupied by cations: a six-nanosecond molecular dynamics study
S Chowdhury, M Bansal - The Journal of Physical Chemistry B, 2001 - ACS Publications
Guanine tetrads are formed spontaneously by guanine rich sequences in the presence of
certain cations. Various quadruplex helical structures, stabilized by such tetrads, apparently …
certain cations. Various quadruplex helical structures, stabilized by such tetrads, apparently …
Oxepane nucleic acids: synthesis, characterization, and properties of oligonucleotides bearing a seven-membered carbohydrate ring
D Sabatino, MJ Damha - Journal of the American Chemical …, 2007 - ACS Publications
The synthesis and properties of oxepane nucleic acids (ONAs) are described. ONAs are
sugar− phosphate oligomers in which the pentofuranose ring of DNA and RNA is replaced …
sugar− phosphate oligomers in which the pentofuranose ring of DNA and RNA is replaced …