Heterocyclic modifications of oligonucleotides and antisense technology

P Herdewijn - Antisense and Nucleic Acid Drug Development, 2000 - liebertpub.com
Modification of the heterocyclic moiety of oligonucleotides has led to the discovery of potent
antisense compounds. This review describes the physicochemical factors that are …

Structure and formation of Z-DNA and Z-RNA

JB Krall, PJ Nichols, MA Henen, Q Vicens, B Vögeli - Molecules, 2023 - mdpi.com
Despite structural differences between the right-handed conformations of A-RNA and B-
DNA, both nucleic acids adopt very similar, left-handed Z-conformations. In contrast to their …

Low dose dimethyl sulfoxide driven gross molecular changes have the potential to interfere with various cellular processes

S Tunçer, R Gurbanov, I Sheraj, E Solel, O Esenturk… - Scientific reports, 2018 - nature.com
Dimethyl sulfoxide (DMSO) is a small molecule with polar, aprotic and amphiphilic
properties. It serves as a solvent for many polar and nonpolar molecules and continues to be …

The use of diaminopurine to investigate structural properties of nucleic acids and molecular recognition between ligands and DNA

C Bailly, MJ Waring - Nucleic acids research, 1998 - academic.oup.com
Diaminopurine (DAP) is an analogue of adenine which can be converted to nucleotides that
serve as substrates for incorporation into nucleic acids by polymerases in place of (d) AMP …

Molecular Mechanisms for the B− Z Transition in the Example of Poly [d (G− C)⊙ d (G− C)] Polymers. A Critical Review

MA Fuertes, V Cepeda, C Alonso, JM Pérez - Chemical reviews, 2006 - ACS Publications
One of the most important achievements in our understanding of the biochemistry of DNA is
our awareness that the double helix has considerable conformational flexibility. The concept …

Enthalpy–entropy compensation in biomolecular halogen bonds measured in DNA junctions

M Carter, AR Voth, MR Scholfield, B Rummel… - Biochemistry, 2013 - ACS Publications
Interest in noncovalent interactions involving halogens, particularly halogen bonds (X-
bonds), has grown dramatically in the past decade, propelled by the use of X-bonding in …

An A-DNA triplet code: thermodynamic rules for predicting A-and B-DNA.

B Basham, GP Schroth, PS Ho - Proceedings of the …, 1995 - National Acad Sciences
The ability to predict macromolecular conformations from sequence and thermodynamic
principles has long been coveted but generally has not been achieved. We show that …

Diaminopurine in Nonenzymatic RNA Template Copying

X Jia, Z Fang, SC Kim, D Ding, L Zhou… - Journal of the …, 2024 - ACS Publications
In the RNA World before the emergence of an RNA polymerase, nonenzymatic template
copying would have been essential for the transmission of genetic information. However, the …

G-quadruplex structure can be stable with only some coordination sites being occupied by cations: a six-nanosecond molecular dynamics study

S Chowdhury, M Bansal - The Journal of Physical Chemistry B, 2001 - ACS Publications
Guanine tetrads are formed spontaneously by guanine rich sequences in the presence of
certain cations. Various quadruplex helical structures, stabilized by such tetrads, apparently …

Oxepane nucleic acids: synthesis, characterization, and properties of oligonucleotides bearing a seven-membered carbohydrate ring

D Sabatino, MJ Damha - Journal of the American Chemical …, 2007 - ACS Publications
The synthesis and properties of oxepane nucleic acids (ONAs) are described. ONAs are
sugar− phosphate oligomers in which the pentofuranose ring of DNA and RNA is replaced …