Personalized proteomics: the future of precision medicine

TT Duarte, CT Spencer - Proteomes, 2016 - mdpi.com
Medical diagnostics and treatment has advanced from a one size fits all science to treatment
of the patient as a unique individual. Currently, this is limited solely to genetic analysis …

Systems vaccinology and big data in the vaccine development chain

RHM Raeven, E van Riet, HD Meiring, B Metz… - …, 2019 - Wiley Online Library
Systems vaccinology has proven a fascinating development in the last decade. Where
traditionally vaccine development has been dominated by trial and error, systems …

Innate receptors with high specificity for HLA class I–peptide complexes

MJW Sim, P Brennan, KL Wahl, J Lu… - Science …, 2023 - science.org
Genetic studies associate killer cell immunoglobulin-like receptors (KIRs) and their HLA
class I ligands with a variety of human diseases. The basis for these associations and the …

Sterile production of interferons in the thymus affects T cell repertoire selection

KM Ashby, M Vobořil, OC Salgado, ST Lee… - Science …, 2024 - science.org
Type I and III interferons (IFNs) are robustly induced during infections and protect cells
against viral infection. Both type I and III IFNs are also produced at low levels in the thymus …

How persistent infection overcomes peripheral tolerance mechanisms to cause T cell–mediated autoimmune disease

R Yin, S Melton, ES Huseby, M Kardar… - Proceedings of the …, 2024 - National Acad Sciences
T cells help orchestrate immune responses to pathogens, and their aberrant regulation can
trigger autoimmunity. Recent studies highlight that a threshold number of T cells (a quorum) …

Therapy-induced MHC I ligands shape neo-antitumor CD8 T cell responses during oncolytic virus-based cancer immunotherapy

JP Murphy, Y Kim, DR Clements, P Konda… - Journal of proteome …, 2019 - ACS Publications
Oncolytic viruses (OVs), known for their cancer-killing characteristics, also overturn tumor-
associated defects in antigen presentation through the MHC class I pathway and induce …

Cell surface MHC class I expression is limited by the availability of peptide‐receptive “empty” molecules rather than by the supply of peptide ligands

L Komov, DM Kadosh, E Barnea, E Milner… - …, 2018 - Wiley Online Library
While antigen processing and presentation (APP) by the major histocompatibility complex
class I (MHC‐I) molecules have been extensively studied, a question arises as to whether …

Heterotypic immunity against vaccinia virus in an HLA-B* 07: 02 transgenic mousepox infection model

A Kumar, NC Suryadevara, KJ Wolf, JT Wilson… - Scientific reports, 2020 - nature.com
Vaccination with vaccinia virus (VACV) elicits heterotypic immunity to smallpox, monkeypox,
and mousepox, the mechanistic basis for which is poorly understood. It is generally …

[HTML][HTML] Cystic fibrosis lung transplant recipients have suppressed airway interferon responses during Pseudomonas infection

DT Dugger, M Fung, L Zlock, S Caldera, L Sharp… - Cell Reports …, 2020 - cell.com
Lung transplantation can be lifesaving in end-stage cystic fibrosis (CF), but long-term
survival is limited by chronic lung allograft dysfunction (CLAD). Persistent upper airway …

Influenza infection recruits distinct waves of regulatory T cells to the lung that limit lung resident IgA+ B cells

LE Sjaastad, DL Owen, S Joo, TP Knutson… - bioRxiv, 2022 - biorxiv.org
The role of regulatory T cells (Tregs) in limiting responses to pathogens in tissues remains
poorly described. We used scRNA-Seq and a newly generated Foxp3-lineage reporter line …