[HTML][HTML] REFMAKER: Make your own reference to target nuclear loci in low coverage genome skimming libraries. Phylogenomic application in Sapotaceae

C Pouchon, CG Boluda - Molecular phylogenetics and evolution, 2023 - Elsevier
Genome skimming approach is widely used in plant systematics to infer phylogenies mostly
from organelle genomes. However, organelles represent only 10% of the produced libraries …

[HTML][HTML] Repetitive Sequence Barcode Probe for Karyotype Analysis in Tripidium arundinaceum

J Chai, L Luo, Z Yu, J Lei, M Zhang, Z Deng - International Journal of …, 2022 - mdpi.com
The barcode probe is a convenient and efficient tool for molecular cytogenetics. Tripidium
arundinaceum, as a polyploid wild allied genus of Saccharum, is a useful genetic resource …

LOCOLOTIVE PIPELINE

U Lautenschlager, A Scheunert - Applications in Plant …, 2023 - search.proquest.com
Methods and Results Target sequences used for probe design are filtered based on an
assembled reference genome, resulting in presumably intron-containing single-copy loci as …

An Evolutionary Framework of Acanthaceae Based on Transcriptomes and Genome Skims

JD Arias, E Manzitto-Tripp, CA Kiel… - Systematic …, 2022 - ingentaconnect.com
Acanthaceae is a family of tropical flowering plants with approximately 4900 species.
Despite remarkable variation in morphological traits, research on patterns of character …

Botany and Taxonomy of Tea (Camellia sinensis, Theaceae) and Its Relatives

DW Zhao - The Tea Plant Genome, 2024 - Springer
Abstract Tea plants, Camellia sect. Thea (Theaceae), are popular beverage sources
worldwide. Camellia sect. Longissima is treated as a new heterotypic synonym of sect. Thea …

Resolving Relationships of Bolbitis sinensis Species Complex Using RAD Sequencing

L Nie, Y Fang, Z Xia, X Wei, Z Wu, Y Yan, F Wang - 2024 - preprints.org
Species identification and phylogenetic relationships clarification are fundamental goals in
species delimitation. Yet these tasks pose challenges when based on morphologies …

[PDF][PDF] Hybrid capture resolves the phylogeny of Tetradium (Rutaceae) and supports the inclusion of a species from Sulawesi

LP Ang, F Brambach, S Tomasello, J Wen… - Journal of Systematics … - researchgate.net
Tetradium, a genus within Rutaceae, comprises nine species found in Eastern and
Southeastern Asia, distinguished by their opposite pinnate leaves and apocarpous or …

[HTML][HTML] Effectiveness of Two Universal Angiosperm Probe Sets Tested In Silico for Caryophyllids Taxa with Emphasis on Cacti Species

DA Chincoya, S Solórzano - Genes, 2022 - mdpi.com
In angiosperms, huge advances in massive DNA sequencing technologies have impacted
phylogenetic studies. Probe sets have been developed with the purpose of recovering …

Species delimitation of North American Nyssa species

YT Yang, XC Yang, MC Wang, LL Zhong… - … of Systematics and …, 2022 - Wiley Online Library
The development of next‐generation sequencing technologies allows researchers to
address complex problems in species delimitation, especially for non‐model organisms. The …

Modern Approaches for Transcriptome Analyses in Plants

DM Riaño-Pachón, HF Espitia-Navarro… - Advances in Plant Omics …, 2022 - Springer
The collection of all transcripts in a cell, a tissue, or an organism is called the transcriptome,
or meta-transcriptome when dealing with the transcripts of a community of different …