Morphology and Bayesian tip-dating recover deep Cretaceous-age divergences among major chrysidid lineages (Hymenoptera: Chrysididae)

DAA Lucena, EAB Almeida - Zoological Journal of the Linnean …, 2022 - academic.oup.com
We integrated phylogenetic, biogeographic and palaeontological data to reconstruct the
evolutionary history of the cuckoo wasps. We propose a phylogenetic hypothesis based on a …

Reconstructing the evolution of Indo-European grammar: Supplementary material

G Carling, C Cathcart - Language, 2021 - muse.jhu.edu
Here, we describe the process used to generate the tree sample used for inference in this
paper, as well as the details of the inference process used to infer evolutionary transition …

Evaluating the adequacy of molecular clock models using posterior predictive simulations

DA Duchêne, S Duchêne, EC Holmes… - Molecular Biology and …, 2015 - academic.oup.com
Molecular clock models are commonly used to estimate evolutionary rates and timescales
from nucleotide sequences. The goal of these models is to account for rate variation among …

Efficient selection of branch-specific models of sequence evolution

JY Dutheil, N Galtier, J Romiguier… - Molecular biology …, 2012 - academic.oup.com
The analysis of extant sequences shows that molecular evolution has been heterogeneous
through time and among lineages. However, for a given sequence alignment, it is often …

[图书][B] Bayesian phylogenetics: methods, algorithms, and applications

MH Chen, L Kuo, PO Lewis - 2014 - books.google.com
Offering a rich diversity of models, Bayesian phylogenetics allows evolutionary biologists,
systematists, ecologists, and epidemiologists to obtain answers to very detailed …

Detecting episodic evolution through Bayesian inference of molecular clock models

JH Tay, G Baele, S Duchene - Molecular Biology and Evolution, 2023 - academic.oup.com
Molecular evolutionary rate variation is a key aspect of the evolution of many organisms that
can be modeled using molecular clock models. For example, fixed local clocks revealed the …

An In Silico Comparison of Protocols for Dated Phylogenomics

RA Collins, T Hrbek - Systematic Biology, 2018 - academic.oup.com
In the age of genome-scale DNA sequencing, choice of molecular marker arguably remains
an important decision in planning a phylogenetic study. Using published genomes from 23 …

[HTML][HTML] A new genus and species of arboreal toad with phytotelmonous larvae, from the Andaman Islands, India (Lissamphibia, Anura, Bufonidae)

SR Chandramouli, K Vasudevan, S Harikrishnan… - ZooKeys, 2016 - ncbi.nlm.nih.gov
A new bufonid amphibian, belonging to a new monotypic genus, is described from the
Andaman Islands, in the Bay of Bengal, Republic of India, based on unique external …

Relative time constraints improve molecular dating

GJ Szöllõsi, S Höhna, TA Williams… - Regular …, 2022 - academic.oup.com
Dating the tree of life is central to understanding the evolution of life on Earth. Molecular
clocks calibrated with fossils represent the state of the art for inferring the ages of major …

Decoupling speed of change and long-term preference in language evolution: Insights from Romance verb stem alternations

C Cathcart, B Herce, B Bickel - 2022 - zora.uzh.ch
Romance verb stem alternations (eg, Spanish tengoI have'vs. tienesyou have') constitute
seemingly unnecessary but highly inheritable morphological traits. Using novel phylogenetic …