Phylogenetic likelihood estimation on GPUs using vertical partitioning scheme
C Ling, J Gao, G Lu - 2016 IEEE Trustcom/BigDataSE/ISPA, 2016 - ieeexplore.ieee.org
Phylogenetic likelihood estimation is one of the most time consuming procedures in
phylogenetic analysis. In this work, we investigate the effect of using a novel storage method …
phylogenetic analysis. In this work, we investigate the effect of using a novel storage method …
Bayesian Molecular Dating
T Zhu - The Molecular Evolutionary Clock: Theory and Practice, 2020 - Springer
Using methods based on the molecular clock, genetic data provide an opportunity to
estimate divergence times across the tree of life. Among the most widely used methods for …
estimate divergence times across the tree of life. Among the most widely used methods for …
[PDF][PDF] Bayesian Phylogenetic Methods
Z Yang - Kliman RM, ed, 2016 - abacus.gene.ucl.ac.uk
Bayesian statistics has the unique feature that uncertainties in all unknowns (such as the
unknown parameters in a model or the competing hypotheses for explaining the same data) …
unknown parameters in a model or the competing hypotheses for explaining the same data) …
Causal modeling refutes Hockett's hypothesis that bite configuration affects human sound evolution
Blasi et al.(Research article, 15 March 2019) argue in support of Hockett's hypothesis–that
languages of hunter-gatherers are less likely to develop labiodental sounds than those of …
languages of hunter-gatherers are less likely to develop labiodental sounds than those of …
What can we learn about plant evolution from a robust phylogenetic framework?
T Carruthers - 2019 - ora.ox.ac.uk
A robust molecular phylogeny provides insights into evolutionary history because it
illustrates the order that different taxa have diverged from each other, and the changes that …
illustrates the order that different taxa have diverged from each other, and the changes that …
[PDF][PDF] Adaptive evolution explains the present-day distribution of the thermal sensitivity of population growth rate
DG Kontopoulos, TP Smith, TG Barraclough, S Pawar - bioRxiv, 2019 - scholar.archive.org
Developing a thorough understanding of how ectotherm physiology adapts to different
thermal environments is of crucial importance, especially in the face of climate change. In …
thermal environments is of crucial importance, especially in the face of climate change. In …
Factors influencing the accuracy and precision in dating single gene trees
G Louvel, HR Crollius - bioRxiv, 2020 - biorxiv.org
Molecular dating is the inference of divergence time from genetic sequences. Knowing the
time of appearance of a taxon sets the evolutionary context by connecting it with past …
time of appearance of a taxon sets the evolutionary context by connecting it with past …
Sampled ancestors and dating in Bayesian phylogenetics
A Gavryushkina - 2017 - researchspace.auckland.ac.nz
This thesis introduces sampled ancestor phylogenetic trees—trees in which sampled taxa
can lie directly on the branches and represent ancestors of other taxa that are sampled later …
can lie directly on the branches and represent ancestors of other taxa that are sampled later …
There and Back Again: Exploring the Roles of Models and Natural History in Macroevolution
M Grundler - 2020 - deepblue.lib.umich.edu
Ecological diversity in nature is tremendously complex. Evolutionary biologists and
ecologists have sought to understand this complexity using foundational concepts like …
ecologists have sought to understand this complexity using foundational concepts like …
[PDF][PDF] Factors influencing the accuracy in dating single gene trees
G Louvel, HR Crollius - scholar.archive.org
CC-BY-ND 4.0 International license made available under a (which was not certified by peer
review) is the author/funder, who has granted bioRxiv a license to display the preprint in …
review) is the author/funder, who has granted bioRxiv a license to display the preprint in …