Observed antibody space: a resource for data mining next-generation sequencing of antibody repertoires

A Kovaltsuk, J Leem, S Kelm, J Snowden… - The Journal of …, 2018 - journals.aai.org
Abs are immune system proteins that recognize noxious molecules for elimination. Their
sequence diversity and binding versatility have made Abs the primary class of …

Strength of immune selection in tumors varies with sex and age

A Castro, RM Pyke, X Zhang, WK Thompson… - Nature …, 2020 - nature.com
Individual MHC genotype constrains the mutational landscape during tumorigenesis.
Immune checkpoint inhibition reactivates immunity against tumors that escaped immune …

Class-switched memory B cells remodel BCRs within secondary germinal centers

LJ McHeyzer-Williams, PJ Milpied, SL Okitsu… - Nature …, 2015 - nature.com
Effective vaccines induce high-affinity memory B cells and durable antibody responses
through accelerated mechanisms of natural selection. Secondary changes in antibody …

tcR: an R package for T cell receptor repertoire advanced data analysis

VI Nazarov, MV Pogorelyy, EA Komech, IV Zvyagin… - BMC …, 2015 - Springer
Abstract Background The Immunoglobulins (IG) and the T cell receptors (TR) play the key
role in antigen recognition during the adaptive immune response. Recent progress in next …

Human responses to influenza vaccination show seroconversion signatures and convergent antibody rearrangements

KJL Jackson, Y Liu, KM Roskin, J Glanville, RA Hoh… - Cell host & …, 2014 - cell.com
B cells produce a diverse antibody repertoire by undergoing gene rearrangements.
Pathogen exposure induces the clonal expansion of B cells expressing antibodies that can …

[PDF][PDF] Influenza virus vaccination elicits poorly adapted B cell responses in elderly individuals

C Henry, NY Zheng, M Huang, A Cabanov, KT Rojas… - Cell Host & Microbe, 2019 - cell.com
Influenza is a leading cause of death in the elderly, and the vaccine protects only a fraction
of this population. A key aspect of antibody-mediated anti-influenza virus immunity is …

Host factors impact vaccine efficacy: implications for seasonal and universal influenza vaccine programs

S Dhakal, SL Klein - Journal of virology, 2019 - Am Soc Microbiol
Influenza is a global public health problem. Current seasonal influenza vaccines have highly
variable efficacy, and thus attempts to develop broadly protective universal influenza …

Incomplete genetic reconstitution of B cell pools contributes to prolonged immunosuppression after measles

VN Petrova, B Sawatsky, AX Han, BM Laksono… - Science …, 2019 - science.org
Measles is a disease caused by the highly infectious measles virus (MeV) that results in both
viremia and lymphopenia. Lymphocyte counts recover shortly after the disappearance of …

High-quality full-length immunoglobulin profiling with unique molecular barcoding

MA Turchaninova, A Davydov, OV Britanova… - Nature protocols, 2016 - nature.com
High-throughput sequencing analysis of hypermutating immunoglobulin (IG) repertoires
remains a challenging task. Here we present a robust protocol for the full-length profiling of …

Bioinformatic and statistical analysis of adaptive immune repertoires

V Greiff, E Miho, U Menzel, ST Reddy - Trends in immunology, 2015 - cell.com
High-throughput sequencing (HTS) of immune repertoires has enabled the quantitative
analysis of adaptive immune responses and offers the potential to revolutionize research in …