cis-Regulatory Elements in Plant Development, Adaptation, and Evolution

AP Marand, AL Eveland, K Kaufmann… - Annual review of …, 2023 - annualreviews.org
cis-Regulatory elements encode the genomic blueprints that ensure the proper
spatiotemporal patterning of gene expression necessary for appropriate development and …

The role and activity of SWI/SNF chromatin remodelers

T Bieluszewski, S Prakash, T Roulé… - Annual Review of Plant …, 2023 - annualreviews.org
SWITCH deficient SUCROSE NONFERMENTING (SWI/SNF) class chromatin remodeling
complexes (CRCs) use the energy derived from ATP hydrolysis to facilitate access of …

A transcription factor hierarchy defines an environmental stress response network

L Song, SC Huang, A Wise, R Castanon, JR Nery… - Science, 2016 - science.org
INTRODUCTION Transcription factors (TFs) are often studied one by one or in clusters of a
few related factors. However, the integration and networks of transcriptional changes to …

MADS-domain transcription factors and the floral quartet model of flower development: linking plant development and evolution

G Theißen, R Melzer, F Rümpler - Development, 2016 - journals.biologists.com
The floral quartet model of floral organ specification poses that different tetramers of MIKC-
type MADS-domain transcription factors control gene expression and hence the identity of …

A genetic network mediating the control of bud break in hybrid aspen

RK Singh, JP Maurya, A Azeez, P Miskolczi… - Nature …, 2018 - nature.com
In boreal and temperate ecosystems, temperature signal regulates the reactivation of growth
(bud break) in perennials in the spring. Molecular basis of temperature-mediated control of …

Developmental and evolutionary diversity of plant MADS-domain factors: insights from recent studies

C Smaczniak, RGH Immink, GC Angenent… - …, 2012 - journals.biologists.com
Members of the MADS-box transcription factor family play essential roles in almost every
developmental process in plants. Many MADS-box genes have conserved functions across …

Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors

DR Boer, A Freire-Rios, WAM Van Den Berg, T Saaki… - Cell, 2014 - cell.com
Auxin regulates numerous plant developmental processes by controlling gene expression
via a family of functionally distinct DNA-binding auxin response factors (ARFs), yet the …

A large-scale identification of direct targets of the tomato MADS box transcription factor RIPENING INHIBITOR reveals the regulation of fruit ripening

M Fujisawa, T Nakano, Y Shima, Y Ito - The Plant Cell, 2013 - academic.oup.com
The fruit ripening developmental program is specific to plants bearing fleshy fruits and
dramatically changes fruit characteristics, including color, aroma, and texture. The tomato …

Auxin response factors: output control in auxin biology

M Roosjen, S Paque, D Weijers - Journal of experimental botany, 2018 - academic.oup.com
The phytohormone auxin is involved in almost all developmental processes in land plants.
Most, if not all, of these processes are mediated by changes in gene expression. Auxin acts …

[HTML][HTML] The Polycomb repressive complex 2 deposits H3K27me3 and represses transposable elements in a broad range of eukaryotes

T Hisanaga, F Romani, S Wu, T Kowar, Y Wu… - Current Biology, 2023 - cell.com
The mobility of transposable elements (TEs) contributes to evolution of genomes. Their
uncontrolled activity causes genomic instability; therefore, expression of TEs is silenced by …