[PDF][PDF] Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics, 2018 - academic.oup.com
Many disciplines, from human genetics and oncology to plant breeding, microbiology and
virology, commonly face the challenge of analyzing rapidly increasing numbers of genomes …
virology, commonly face the challenge of analyzing rapidly increasing numbers of genomes …
[HTML][HTML] The impact of third generation genomic technologies on plant genome assembly
WB Jiao, K Schneeberger - Current opinion in plant biology, 2017 - Elsevier
Highlights•Plant genomes are more repetitive and complicate to assemble than
vertebrates.•Long-read assembly contigs outperform short-read assembly scaffolds.•Long …
vertebrates.•Long-read assembly contigs outperform short-read assembly scaffolds.•Long …
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
AL Mitchell, TK Attwood, PC Babbitt… - Nucleic acids …, 2019 - academic.oup.com
Abstract The InterPro database (http://www. ebi. ac. uk/interpro/) classifies protein
sequences into families and predicts the presence of functionally important domains and …
sequences into families and predicts the presence of functionally important domains and …
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
I Kalvari, J Argasinska, N Quinones-Olvera… - Nucleic acids …, 2018 - academic.oup.com
The Rfam database is a collection of RNA families in which each family is represented by a
multiple sequence alignment, a consensus secondary structure, and a covariance model. In …
multiple sequence alignment, a consensus secondary structure, and a covariance model. In …
[HTML][HTML] Multiscale analysis of independent Alzheimer's cohorts finds disruption of molecular, genetic, and clinical networks by human herpesvirus
Investigators have long suspected that pathogenic microbes might contribute to the onset
and progression of Alzheimer's disease (AD) although definitive evidence has not been …
and progression of Alzheimer's disease (AD) although definitive evidence has not been …
InterPro in 2017—beyond protein family and domain annotations
Abstract InterPro (http://www. ebi. ac. uk/interpro/) is a freely available database used to
classify protein sequences into families and to predict the presence of important domains …
classify protein sequences into families and to predict the presence of important domains …
PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics
Abstract PLAZA (https://bioinformatics. psb. ugent. be/plaza) is a plant-oriented online
resource for comparative, evolutionary and functional genomics. The PLAZA platform …
resource for comparative, evolutionary and functional genomics. The PLAZA platform …
Expression Atlas: gene and protein expression across multiple studies and organisms
I Papatheodorou, NA Fonseca, M Keays… - Nucleic acids …, 2018 - academic.oup.com
Abstract Expression Atlas (http://www. ebi. ac. uk/gxa) is an added value database that
provides information about gene and protein expression in different species and contexts …
provides information about gene and protein expression in different species and contexts …
IgA regulates the composition and metabolic function of gut microbiota by promoting symbiosis between bacteria
A Nakajima, A Vogelzang, M Maruya… - Journal of Experimental …, 2018 - rupress.org
Immunoglobulin A (IgA) promotes health by regulating the composition and function of gut
microbiota, but the molecular requirements for such homeostatic IgA function remain …
microbiota, but the molecular requirements for such homeostatic IgA function remain …
A comprehensive and dated phylogenomic analysis of butterflies
Summary Butterflies (Papilionoidea), with over 18,000 described species [1], have
captivated naturalists and scientists for centuries. They play a central role in the study of …
captivated naturalists and scientists for centuries. They play a central role in the study of …