Synteny identifies reliable orthologs for phylogenomics and comparative genomics of the Brassicaceae
N Walden, ME Schranz - Genome Biology and Evolution, 2023 - academic.oup.com
Large genomic data sets are becoming the new normal in phylogenetic research, but the
identification of true orthologous genes and the exclusion of problematic paralogs is still …
identification of true orthologous genes and the exclusion of problematic paralogs is still …
[HTML][HTML] Frequent ploidy changes in Salicaceae indicates widespread sharing of the salicoid whole genome duplication by the relatives of Populus L. and Salix L.
ZS Zhang, QY Zeng, YJ Liu - BMC plant biology, 2021 - Springer
Abstract Backgrounds Populus and Salix belong to Salicaceae and are used as models to
investigate woody plant physiology. The variation of karyotype and nuclear DNA content can …
investigate woody plant physiology. The variation of karyotype and nuclear DNA content can …
Genetic variation in Loudetia simplex supports the presence of ancient grasslands in Madagascar
Societal Impact Statement Recognizing Loudetia‐dominated grasslands were widespread
prior to human colonization highlights that open ecosystems were and continue to be an …
prior to human colonization highlights that open ecosystems were and continue to be an …
Phylogenomics and generic limits of Dypsidinae (Arecaceae), the largest palm radiation in Madagascar
With 178 species, palm subtribe Dypsidinae is one of the largest plant radiations on
Madagascar. A well‐resolved species‐level phylogeny is required not only to unpick the …
Madagascar. A well‐resolved species‐level phylogeny is required not only to unpick the …
Barking up the wrong tree: the importance of morphology in plant molecular phylogenetic studies
Background and aims Keraunea is a genus recently described in Convolvulaceae, though it
has sat uncomfortably in this family. A recent molecular phylogenetic study suggests that its …
has sat uncomfortably in this family. A recent molecular phylogenetic study suggests that its …
Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)
Reconstructing evolutionary trajectories and transitions that have shaped floral diversity
relies heavily on the phylogenetic framework on which traits are modelled. In this study, we …
relies heavily on the phylogenetic framework on which traits are modelled. In this study, we …
'Out of Africa' origin of the pantropical staghorn fern genus Platycerium (Polypodiaceae) supported by plastid phylogenomics and biogeographical analysis
Abstract Background and Aims The staghorn fern genus Platycerium is one of the most
commonly grown ornamental ferns, and it evolved to occupy a typical pantropical …
commonly grown ornamental ferns, and it evolved to occupy a typical pantropical …
Phylogenomics of mulberries (Morus, Moraceae) inferred from plastomes and single copy nuclear genes
M Wang, M Zhu, J Qian, Z Yang, F Shang… - Molecular Phylogenetics …, 2024 - Elsevier
Mulberries (genus Morus), belonging to the order Rosales, family Moraceae, are important
woody plants due to their economic values in sericulture, as well as for nutritional benefits …
woody plants due to their economic values in sericulture, as well as for nutritional benefits …
Unravelling phylogenetic relationships of the tribe Cereeae using target enrichment sequencing
Abstract Background and Aims Cactaceae are succulent plants, quasi-endemic to the
American continent, and one of the most endangered plant groups in the world. Molecular …
American continent, and one of the most endangered plant groups in the world. Molecular …
A new nuclear phylogeny of the tea family (Theaceae) unravels rapid radiations in genus Camellia
Molecular analyses of rapidly radiating groups often reveal incongruence between gene
trees. This mainly results from incomplete lineage sorting, introgression, and gene tree …
trees. This mainly results from incomplete lineage sorting, introgression, and gene tree …