[HTML][HTML] The evolution of long noncoding RNA acceptance in prostate cancer initiation, progression, and its clinical utility in disease management

VR Ramnarine, M Kobelev, EA Gibb, M Nouri, D Lin… - European urology, 2019 - Elsevier
Context It is increasingly evident that non–protein-coding regions of the genome can give
rise to transcripts that form functional layers of the cancer genome. One of most abundant …

SNP-target genes interaction perturbing the cancer risk in the post-GWAS

W Yang, T Zhang, X Song, G Dong, L Xu, F Jiang - Cancers, 2022 - mdpi.com
Simple Summary Genome-wide association studies have identified a vast number of cancer
risk-associated loci harboring numerous single nucleotide polymorphisms that regulate …

Transposable elements are co-opted as oncogenic regulatory elements by lineage-specific transcription factors in prostate cancer

G Grillo, T Keshavarzian, S Linder, C Arlidge, L Mout… - Cancer discovery, 2023 - AACR
Transposable elements hold regulatory functions that impact cell fate determination by
controlling gene expression. However, little is known about the transcriptional machinery …

Distinct regulatory functions and biological roles of lncRNA splice variants

MR Khan, M Avino, RJ Wellinger, B Laurent - Molecular Therapy-Nucleic …, 2023 - cell.com
Alternative splicing (AS) of RNA molecules is a key contributor to transcriptome diversity. In
humans, 90%–95% of multi-exon genes produce alternatively spliced RNA transcripts …

Functional characterization of human genomic variation linked to polygenic diseases

T Fabo, P Khavari - Trends in Genetics, 2023 - cell.com
The burden of human disease lies predominantly in polygenic diseases. Since the early
2000s, genome-wide association studies (GWAS) have identified genetic variants and loci …

Illuminating the noncoding genome in cancer

X Zhang, M Meyerson - Nature cancer, 2020 - nature.com
Understanding the mechanisms underlying tumorigenesis requires comprehensive
annotation of the cancer genome. The majority of the human genome consists of noncoding …

Noncoding RNA mutations in cancer

H Zhou, X Hao, P Zhang, S He - Wiley Interdisciplinary Reviews …, 2023 - Wiley Online Library
Cancer is driven by both germline and somatic genetic changes. Efforts have been devoted
to characterizing essential genetic variations in cancer initiation and development. Most …

SMAD3/SP1 complex‐mediated constitutive active loop between lncRNA PCAT7 and TGF‐β signaling promotes prostate cancer bone metastasis

C Lang, Y Dai, Z Wu, Q Yang, S He, X Zhang… - Molecular …, 2020 - Wiley Online Library
Bone metastasis is associated with cancer‐related death in patients with prostate cancer
(PCa). Long noncoding RNAs (lncRNAs) play critical roles in tumor progression of PCa …

SNP-mediated lncRNA-ENTPD3-AS1 upregulation suppresses renal cell carcinoma via miR-155/HIF-1α signaling

J Wang, Y Zou, B Du, W Li, G Yu, L Li, L Zhou… - Cell Death & …, 2021 - nature.com
Over the last decade, more than 10 independent SNPs have been discovered to be
associated with the risk of renal cell carcinoma among different populations. However, the …

CRISPRi screens reveal a DNA methylation-mediated 3D genome dependent causal mechanism in prostate cancer

M Ahmed, F Soares, JH Xia, Y Yang, J Li, H Guo… - Nature …, 2021 - nature.com
Prostate cancer (PCa) risk-associated SNPs are enriched in noncoding cis-regulatory
elements (rCREs), yet their modi operandi and clinical impact remain elusive. Here, we …