DNA methylation dynamics during stress response in woodland strawberry (Fragaria vesca)
Environmental stresses can result in a wide range of physiological and molecular responses
in plants. These responses can also impact epigenetic information in genomes, especially at …
in plants. These responses can also impact epigenetic information in genomes, especially at …
Genetic and environmental drivers of large-scale epigenetic variation in Thlaspi arvense
D Galanti, D Ramos-Cruz, A Nunn… - PLoS …, 2022 - journals.plos.org
Natural plant populations often harbour substantial heritable variation in DNA methylation.
However, a thorough understanding of the genetic and environmental drivers of this …
However, a thorough understanding of the genetic and environmental drivers of this …
DNA methylation in the wild: epigenetic transgenerational inheritance can mediate adaptation in clones of wild strawberry (Fragaria vesca)
I Sammarco, B Díez Rodríguez, D Galanti… - New …, 2024 - Wiley Online Library
Due to the accelerating climate change, it is crucial to understand how plants adapt to rapid
environmental changes. Such adaptation may be mediated by epigenetic mechanisms like …
environmental changes. Such adaptation may be mediated by epigenetic mechanisms like …
MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite …
Whole-genome bisulfite sequencing (WGBS) is the standard method for profiling DNA
methylation at single-nucleotide resolution. Different tools have been developed to extract …
methylation at single-nucleotide resolution. Different tools have been developed to extract …
Manipulating base quality scores enables variant calling from bisulfite sequencing alignments using conventional Bayesian approaches
Background Calling germline SNP variants from bisulfite-converted sequencing data poses
a challenge for conventional software, which have no inherent capability to dissociate true …
a challenge for conventional software, which have no inherent capability to dissociate true …
High-resolution methylome analysis uncovers stress-responsive genomic hotspots and drought-sensitive TE superfamilies in the clonal Lombardy poplar
C Peña-Ponton, B Diez-Rodriguez… - Journal of …, 2024 - academic.oup.com
DNA methylation is environment-sensitive and can mediate stress responses. In long-lived
trees, changing environments might cumulatively shape the methylome landscape over their …
trees, changing environments might cumulatively shape the methylome landscape over their …
Herbivory induced methylation changes in the Lombardy poplar: A comparison of results obtained by epiGBS and WGBS
DNA cytosine methylation is an epigenetic mechanism involved in regulation of plant
responses to biotic and abiotic stress and its ability to change can vary with the sequence …
responses to biotic and abiotic stress and its ability to change can vary with the sequence …
Epigenetic variation in the Lombardy poplar along climatic gradients is independent of genetic structure and persists across clonal reproduction
BD Rodríguez, D Galanti, A Nunn, C Peña-Ponton… - bioRxiv, 2022 - biorxiv.org
Environmental changes can trigger phenotypic variation in plants through epigenetic
mechanisms, but strong genetic influences make it difficult to isolate and study epigenetic …
mechanisms, but strong genetic influences make it difficult to isolate and study epigenetic …
BSXplorer: analytical framework for exploratory analysis of BS-seq data
K Yuditskiy, I Bezdvornykh, A Kazantseva, A Kanapin… - BMC …, 2024 - Springer
Background Bisulfite sequencing detects and quantifies DNA methylation patterns,
contributing to our understanding of gene expression regulation, genome stability …
contributing to our understanding of gene expression regulation, genome stability …
High-resolution methylome analysis in the clonal Populus nigra cv. 'Italica' reveals environmentally sensitive hotspots and drought-responsive TE superfamilies
C Peña-Ponton, B Diez-Rodriguez, P Perez-Bello… - bioRxiv, 2022 - biorxiv.org
ABSTRACT/SUMMARY DNA methylation is environment-sensitive and can mediate plant
stress responses. In long-lived trees, changing environments might cumulatively shape the …
stress responses. In long-lived trees, changing environments might cumulatively shape the …