In silico methods and tools for drug discovery

B Shaker, S Ahmad, J Lee, C Jung, D Na - Computers in biology and …, 2021 - Elsevier
In the past, conventional drug discovery strategies have been successfully employed to
develop new drugs, but the process from lead identification to clinical trials takes more than …

Artificial intelligence in drug discovery and development

KK Mak, YH Wong, MR Pichika - Drug Discovery and Evaluation: Safety …, 2023 - Springer
This chapter comprehensively explores the pivotal role of artificial intelligence (AI) in drug
discovery and development, encapsulating its potentials, methodologies, real-world …

Targeting cyclin-dependent kinase 1 (CDK1) in cancer: molecular docking and dynamic simulations of potential CDK1 inhibitors

S Sofi, U Mehraj, H Qayoom, S Aisha, A Almilaibary… - Medical Oncology, 2022 - Springer
Cell cycle dysregulation is a characteristic hallmark of malignancies, which results in
uncontrolled cell proliferation and eventual tumor formation. Cyclin-dependent kinase 1 …

SuperPred 3.0: drug classification and target prediction—a machine learning approach

K Gallo, A Goede, R Preissner… - Nucleic Acids …, 2022 - academic.oup.com
Since the last published update in 2014, the SuperPred webserver has been continuously
developed to offer state-of-the-art models for drug classification according to ATC classes …

HyperAttentionDTI: improving drug–protein interaction prediction by sequence-based deep learning with attention mechanism

Q Zhao, H Zhao, K Zheng, J Wang - Bioinformatics, 2022 - academic.oup.com
Motivation Identifying drug–target interactions (DTIs) is a crucial step in drug repurposing
and drug discovery. Accurately identifying DTIs in silico can significantly shorten …

An in silico study of sustainable drug pollutants removal using carboxylic acid functionalized-MOF nanostructures (MIL-53 (Al)-(COOH) 2): Towards a greener future

I Salahshoori, MN Jorabchi, S Ghasemi, M Golriz… - Desalination, 2023 - Elsevier
Emerging environmental pollutants have become a major environmental challenge due to
the highly toxic effluents produced by industries. Among these emerging pollutants …

Cheminformatics in natural product‐based drug discovery

Y Chen, J Kirchmair - Molecular Informatics, 2020 - Wiley Online Library
This review seeks to provide a timely survey of the scope and limitations of cheminformatics
methods in natural product‐based drug discovery. Following an overview of data resources …

Virtual screening web servers: designing chemical probes and drug candidates in the cyberspace

N Singh, L Chaput, BO Villoutreix - Briefings in bioinformatics, 2021 - academic.oup.com
The interplay between life sciences and advancing technology drives a continuous cycle of
chemical data growth; these data are most often stored in open or partially open databases …

A review on the recent applications of deep learning in predictive drug toxicological studies

K Sinha, N Ghosh, PC Sil - Chemical Research in Toxicology, 2023 - ACS Publications
Drug toxicity prediction is an important step in ensuring patient safety during drug design
studies. While traditional preclinical studies have historically relied on animal models to …

[HTML][HTML] DTITR: End-to-end drug–target binding affinity prediction with transformers

NRC Monteiro, JL Oliveira, JP Arrais - Computers in Biology and Medicine, 2022 - Elsevier
The accurate identification of Drug–Target Interactions (DTIs) remains a critical turning point
in drug discovery and understanding of the binding process. Despite recent advances in …