Directed evolution: methodologies and applications

Y Wang, P Xue, M Cao, T Yu, ST Lane… - Chemical reviews, 2021 - ACS Publications
Directed evolution aims to expedite the natural evolution process of biological molecules
and systems in a test tube through iterative rounds of gene diversifications and library …

Hacking the cancer genome: profiling therapeutically actionable long non-coding RNAs using CRISPR-Cas9 screening

R Esposito, N Bosch, A Lanzós, T Polidori… - Cancer cell, 2019 - cell.com
Long non-coding RNAs (lncRNAs) represent a huge reservoir of potential cancer targets.
Such" onco-lncRNAs" have resisted traditional RNAi methods, but CRISPR-Cas9 genome …

[HTML][HTML] Functional genetic variants revealed by massively parallel precise genome editing

E Sharon, SAA Chen, NM Khosla, JD Smith… - Cell, 2018 - cell.com
A major challenge in genetics is to identify genetic variants driving natural phenotypic
variation. However, current methods of genetic mapping have limited resolution. To address …

Application of combinatorial optimization strategies in synthetic biology

G Naseri, MAG Koffas - Nature communications, 2020 - nature.com
In the first wave of synthetic biology, genetic elements, combined into simple circuits, are
used to control individual cellular functions. In the second wave of synthetic biology, the …

CRISPR/Cas-mediated gene targeting in plants: finally a turn for the better for homologous recombination

TK Huang, H Puchta - Plant Cell Reports, 2019 - Springer
Key message We summarize recent progress of CRISPR/Cas9-mediated gene targeting in
plants, provide recommendations for designing gene-targeting vectors and highlight the …

Base editor screens for in situ mutational scanning at scale

NZ Lue, BB Liau - Molecular Cell, 2023 - cell.com
A fundamental challenge in biology is understanding the molecular details of protein
function. How mutations alter protein activity, regulation, and response to drugs is of critical …

CRISPR screens in plants: approaches, guidelines, and future prospects

C Gaillochet, W Develtere, TB Jacobs - The Plant Cell, 2021 - academic.oup.com
Clustered regularly interspaced short palindromic repeat (CRISPR)-associated systems
have revolutionized genome engineering by facilitating a wide range of targeted DNA …

Towards next-generation cell factories by rational genome-scale engineering

S Yilmaz, A Nyerges, J van der Oost, GM Church… - Nature Catalysis, 2022 - nature.com
Metabolic engineering holds the promise to transform the chemical industry and to support
the transition into a circular bioeconomy, by engineering cellular biocatalysts that efficiently …

RNAi/CRISPR screens: from a pool to a valid hit

A Schuster, H Erasimus, S Fritah, PV Nazarov… - Trends in …, 2019 - cell.com
High-throughput genetic screens interfering with gene expression are invaluable tools to
identify gene function and phenotype-to-genotype interactions. Implementing such screens …

Present and future prospects for wheat improvement through genome editing and advanced technologies

S Li, C Zhang, J Li, L Yan, N Wang, L Xia - Plant Communications, 2021 - cell.com
Abstract Wheat (Triticum aestivum, 2n= 6x= 42, AABBDD) is one of the most important staple
food crops in the world. Despite the fact that wheat production has significantly increased …