Molecular‐clock methods for estimating evolutionary rates and timescales

SYW Ho, S Duchêne - Molecular ecology, 2014 - Wiley Online Library
The molecular clock presents a means of estimating evolutionary rates and timescales using
genetic data. These estimates can lead to important insights into evolutionary processes and …

The emerging phylogenetic perspective on the evolution of actinopterygian fishes

A Dornburg, TJ Near - Annual Review of Ecology, Evolution …, 2021 - annualreviews.org
The emergence of a new phylogeny of ray-finned fishes at the turn of the twenty-first century
marked a paradigm shift in understanding the evolutionary history of half of living …

[HTML][HTML] Inferring the mammal tree: species-level sets of phylogenies for questions in ecology, evolution, and conservation

NS Upham, JA Esselstyn, W Jetz - PLoS biology, 2019 - journals.plos.org
Big, time-scaled phylogenies are fundamental to connecting evolutionary processes to
modern biodiversity patterns. Yet inferring reliable phylogenetic trees for thousands of …

Extant timetrees are consistent with a myriad of diversification histories

S Louca, MW Pennell - Nature, 2020 - nature.com
Time-calibrated phylogenies of extant species (referred to here as 'extant timetrees') are
widely used for estimating diversification dynamics. However, there has been considerable …

[HTML][HTML] BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

R Bouckaert, TG Vaughan… - PLoS computational …, 2019 - journals.plos.org
Elaboration of Bayesian phylogenetic inference methods has continued at pace in recent
years with major new advances in nearly all aspects of the joint modelling of evolutionary …

[HTML][HTML] Widespread introgression across a phylogeny of 155 Drosophila genomes

A Suvorov, BY Kim, J Wang, EE Armstrong, D Peede… - Current Biology, 2022 - cell.com
Genome-scale sequence data have invigorated the study of hybridization and introgression,
particularly in animals. However, outside of a few notable cases, we lack systematic tests for …

[HTML][HTML] Sector coupling via hydrogen to lower the cost of energy system decarbonization

G He, DS Mallapragada, A Bose… - Energy & …, 2021 - pubs.rsc.org
There is growing interest in using hydrogen (H2) as a long-duration energy storage resource
in a future electric grid dominated by variable renewable energy (VRE) generation …

A metacalibrated time‐tree documents the early rise of flowering plant phylogenetic diversity

S Magallón, S Gómez‐Acevedo… - New …, 2015 - Wiley Online Library
The establishment of modern terrestrial life is indissociable from angiosperm evolution.
While available molecular clock estimates of angiosperm age range from the Paleozoic to …

[图书][B] Bayesian evolutionary analysis with BEAST

AJ Drummond, RR Bouckaert - 2015 - books.google.com
What are the models used in phylogenetic analysis and what exactly is involved in Bayesian
evolutionary analysis using Markov chain Monte Carlo (MCMC) methods? How can you …

[HTML][HTML] Uncertainty in the timing of origin of animals and the limits of precision in molecular timescales

M Dos Reis, Y Thawornwattana, K Angelis, MJ Telford… - Current biology, 2015 - cell.com
The timing of divergences among metazoan lineages is integral to understanding the
processes of animal evolution, placing the biological events of species divergences into the …