Database resources of the national center for biotechnology information

EW Sayers, EE Bolton, JR Brister… - Nucleic acids …, 2022 - academic.oup.com
Abstract The National Center for Biotechnology Information (NCBI) produces a variety of
online information resources for biology, including the GenBank® nucleic acid sequence …

[HTML][HTML] Roadmap for naming uncultivated Archaea and Bacteria

AE Murray, J Freudenstein, S Gribaldo… - Nature …, 2020 - nature.com
The assembly of single-amplified genomes (SAGs) and metagenome-assembled genomes
(MAGs) has led to a surge in genome-based discoveries of members affiliated with Archaea …

Rfam 14: expanded coverage of metagenomic, viral and microRNA families

I Kalvari, EP Nawrocki… - Nucleic Acids …, 2021 - academic.oup.com
Rfam is a database of RNA families where each of the 3444 families is represented by a
multiple sequence alignment of known RNA sequences and a covariance model that can be …

[HTML][HTML] A unified catalog of 204,938 reference genomes from the human gut microbiome

A Almeida, S Nayfach, M Boland, F Strozzi… - Nature …, 2021 - nature.com
Comprehensive, high-quality reference genomes are required for functional characterization
and taxonomic assignment of the human gut microbiota. We present the Unified Human …

BlobToolKit–interactive quality assessment of genome assemblies

R Challis, E Richards, J Rajan… - G3: Genes …, 2020 - academic.oup.com
Reconstruction of target genomes from sequence data produced by instruments that are
agnostic as to the species-of-origin may be confounded by contaminant DNA. Whether …

[HTML][HTML] Systematic investigation of cytokine signaling activity at the tissue and single-cell levels

P Jiang, Y Zhang, B Ru, Y Yang, T Vu, R Paul… - Nature …, 2021 - nature.com
Cytokines are critical for intercellular communication in human health and disease, but the
investigation of cytokine signaling activity has remained challenging due to the short half …

The international nucleotide sequence database collaboration

M Arita, I Karsch-Mizrachi… - Nucleic Acids Research, 2021 - academic.oup.com
Abstract The International Nucleotide Sequence Database Collaboration (INSDC;
http://www. insdc. org/) has been the core infrastructure for collecting and providing …

OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more

AM Altenhoff, CM Train, KJ Gilbert… - Nucleic acids …, 2021 - academic.oup.com
OMA is an established resource to elucidate evolutionary relationships among genes from
currently 2326 genomes covering all domains of life. OMA provides pairwise and groupwise …

The european nucleotide archive in 2020

PW Harrison, A Ahamed, R Aslam… - Nucleic acids …, 2021 - academic.oup.com
Abstract The European Nucleotide Archive (ENA; https://www. ebi. ac. uk/ena), provided by
the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI) …

The European Variation Archive: a FAIR resource of genomic variation for all species

T Cezard, F Cunningham, SE Hunt… - Nucleic Acids …, 2022 - academic.oup.com
Abstract The European Variation Archive (EVA; https://www. ebi. ac. uk/eva/) is a resource
for sharing all types of genetic variation data (SNPs, indels, and structural variants) for all …