Database resources of the national center for biotechnology information
Abstract The National Center for Biotechnology Information (NCBI) produces a variety of
online information resources for biology, including the GenBank® nucleic acid sequence …
online information resources for biology, including the GenBank® nucleic acid sequence …
[HTML][HTML] Roadmap for naming uncultivated Archaea and Bacteria
AE Murray, J Freudenstein, S Gribaldo… - Nature …, 2020 - nature.com
The assembly of single-amplified genomes (SAGs) and metagenome-assembled genomes
(MAGs) has led to a surge in genome-based discoveries of members affiliated with Archaea …
(MAGs) has led to a surge in genome-based discoveries of members affiliated with Archaea …
Rfam 14: expanded coverage of metagenomic, viral and microRNA families
I Kalvari, EP Nawrocki… - Nucleic Acids …, 2021 - academic.oup.com
Rfam is a database of RNA families where each of the 3444 families is represented by a
multiple sequence alignment of known RNA sequences and a covariance model that can be …
multiple sequence alignment of known RNA sequences and a covariance model that can be …
[HTML][HTML] A unified catalog of 204,938 reference genomes from the human gut microbiome
Comprehensive, high-quality reference genomes are required for functional characterization
and taxonomic assignment of the human gut microbiota. We present the Unified Human …
and taxonomic assignment of the human gut microbiota. We present the Unified Human …
BlobToolKit–interactive quality assessment of genome assemblies
R Challis, E Richards, J Rajan… - G3: Genes …, 2020 - academic.oup.com
Reconstruction of target genomes from sequence data produced by instruments that are
agnostic as to the species-of-origin may be confounded by contaminant DNA. Whether …
agnostic as to the species-of-origin may be confounded by contaminant DNA. Whether …
[HTML][HTML] Systematic investigation of cytokine signaling activity at the tissue and single-cell levels
Cytokines are critical for intercellular communication in human health and disease, but the
investigation of cytokine signaling activity has remained challenging due to the short half …
investigation of cytokine signaling activity has remained challenging due to the short half …
The international nucleotide sequence database collaboration
M Arita, I Karsch-Mizrachi… - Nucleic Acids Research, 2021 - academic.oup.com
Abstract The International Nucleotide Sequence Database Collaboration (INSDC;
http://www. insdc. org/) has been the core infrastructure for collecting and providing …
http://www. insdc. org/) has been the core infrastructure for collecting and providing …
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more
OMA is an established resource to elucidate evolutionary relationships among genes from
currently 2326 genomes covering all domains of life. OMA provides pairwise and groupwise …
currently 2326 genomes covering all domains of life. OMA provides pairwise and groupwise …
The european nucleotide archive in 2020
PW Harrison, A Ahamed, R Aslam… - Nucleic acids …, 2021 - academic.oup.com
Abstract The European Nucleotide Archive (ENA; https://www. ebi. ac. uk/ena), provided by
the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI) …
the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI) …
The European Variation Archive: a FAIR resource of genomic variation for all species
T Cezard, F Cunningham, SE Hunt… - Nucleic Acids …, 2022 - academic.oup.com
Abstract The European Variation Archive (EVA; https://www. ebi. ac. uk/eva/) is a resource
for sharing all types of genetic variation data (SNPs, indels, and structural variants) for all …
for sharing all types of genetic variation data (SNPs, indels, and structural variants) for all …