Reap the crop wild relatives for breeding future crops
Crop wild relatives (CWRs) have provided breeders with several'game-changing'traits or
genes that have boosted crop resilience and global agricultural production. Advances in …
genes that have boosted crop resilience and global agricultural production. Advances in …
Current status of structural variation studies in plants
Structural variations (SVs) including gene presence/absence variations and copy number
variations are a common feature of genomes in plants and, together with single nucleotide …
variations are a common feature of genomes in plants and, together with single nucleotide …
Graph pangenome captures missing heritability and empowers tomato breeding
Missing heritability in genome-wide association studies defines a major problem in genetic
analyses of complex biological traits,. The solution to this problem is to identify all causal …
analyses of complex biological traits,. The solution to this problem is to identify all causal …
Genome evolution and diversity of wild and cultivated potatoes
Potato (Solanum tuberosum L.) is the world's most important non-cereal food crop, and the
vast majority of commercially grown cultivars are highly heterozygous tetraploids. Advances …
vast majority of commercially grown cultivars are highly heterozygous tetraploids. Advances …
Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species
Effective utilization of wild relatives is key to overcoming challenges in genetic improvement
of cultivated tomato, which has a narrow genetic basis; however, current efforts to decipher …
of cultivated tomato, which has a narrow genetic basis; however, current efforts to decipher …
Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing
Advancing crop genomics requires efficient genetic systems enabled by high-quality
personalized genome assemblies. Here, we introduce RagTag, a toolset for automating …
personalized genome assemblies. Here, we introduce RagTag, a toolset for automating …
AlphaFold-Multimer predicts cross-kingdom interactions at the plant-pathogen interface
Adapted plant pathogens from various microbial kingdoms produce hundreds of unrelated
small secreted proteins (SSPs) with elusive roles. Here, we used AlphaFold-Multimer (AFM) …
small secreted proteins (SSPs) with elusive roles. Here, we used AlphaFold-Multimer (AFM) …
Automated assembly scaffolding elevates a new tomato system for high-throughput genome editing
M Alonge, L Lebeigle, M Kirsche, S Aganezov, X Wang… - BioRxiv, 2021 - biorxiv.org
Advancing crop genomics requires efficient genetic systems enabled by high-quality
personalized genome assemblies. Here, we introduce RagTag, a toolset for automating …
personalized genome assemblies. Here, we introduce RagTag, a toolset for automating …
Structural variation and introgression from wild populations in East Asian cattle genomes confer adaptation to local environment
X Xia, F Zhang, S Li, X Luo, L Peng, Z Dong, H Pausch… - Genome Biology, 2023 - Springer
Abstract Background Structural variations (SVs) in individual genomes are major
determinants of complex traits, including adaptability to environmental variables. The …
determinants of complex traits, including adaptability to environmental variables. The …
Unravelling inversions: Technological advances, challenges, and potential impact on crop breeding
Inversions, a type of chromosomal structural variation, significantly influence plant
adaptation and gene functions by impacting gene expression and recombination rates …
adaptation and gene functions by impacting gene expression and recombination rates …