Cis-regulatory sequences in plants: their importance, discovery, and future challenges

RJ Schmitz, E Grotewold, M Stam - The plant cell, 2022 - academic.oup.com
The identification and characterization of cis-regulatory DNA sequences and how they
function to coordinate responses to developmental and environmental cues is of paramount …

Recent advances in crop transformation technologies

Z Chen, JM Debernardi, J Dubcovsky, A Gallavotti - Nature plants, 2022 - nature.com
Agriculture is experiencing a technological inflection point in its history, while also facing
unprecedented challenges posed by human population growth and global climate changes …

Single-cell transcriptome analysis in plants: advances and challenges

R Shaw, X Tian, J Xu - Molecular Plant, 2021 - cell.com
The rapid and enthusiastic adoption of single-cell RNA sequencing (scRNA-seq) has
demonstrated that this technology is far more than just another way to perform transcriptome …

Single-cell RNA sequencing resolves molecular relationships among individual plant cells

KH Ryu, L Huang, HM Kang, J Schiefelbein - Plant physiology, 2019 - academic.oup.com
Single-cell RNA sequencing (scRNA-seq) has been used extensively to study cell-specific
gene expression in animals, but it has not been widely applied to plants. Here, we describe …

Synthetic memory circuits for stable cell reprogramming in plants

JPB Lloyd, F Ly, P Gong, J Pflueger, T Swain… - Nature …, 2022 - nature.com
Plant biotechnology predominantly relies on a restricted set of genetic parts with limited
capability to customize spatiotemporal and conditional expression patterns. Synthetic gene …

High-throughput single-cell transcriptome profiling of plant cell types

CN Shulse, BJ Cole, D Ciobanu, J Lin, Y Yoshinaga… - Cell reports, 2019 - cell.com
Single-cell transcriptome profiling of heterogeneous tissues can provide high-resolution
windows into developmental dynamics and environmental responses, but its application to …

Single-cell resolution of lineage trajectories in the Arabidopsis stomatal lineage and developing leaf

CB Lopez-Anido, A Vatén, NK Smoot, N Sharma… - Developmental cell, 2021 - cell.com
Dynamic cell identities underlie flexible developmental programs. The stomatal lineage in
the Arabidopsis leaf epidermis features asynchronous and indeterminate divisions that can …

Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization

P Roszak, J Heo, B Blob, K Toyokura, Y Sugiyama… - Science, 2021 - science.org
INTRODUCTION The plant root grows indeterminately. Continual birth and maturation of
cells in a gradient along the root longitudinal axis requires tissue-wide coordination of cell …

Advances and opportunities in single-cell transcriptomics for plant research

C Seyfferth, J Renema, JR Wendrich… - Annual Review of …, 2021 - annualreviews.org
Single-cell approaches are quickly changing our view on biological systems by increasing
the spatiotemporal resolution of our analyses to the level of the individual cell. The field of …

Molecular mechanisms of plant regeneration

M Ikeuchi, DS Favero, Y Sakamoto… - Annual review of …, 2019 - annualreviews.org
Plants reprogram somatic cells following injury and regenerate new tissues and organs.
Upon perception of inductive cues, somatic cells often dedifferentiate, proliferate, and …