Stochastic thermodynamics, fluctuation theorems and molecular machines

U Seifert - Reports on progress in physics, 2012 - iopscience.iop.org
Stochastic thermodynamics as reviewed here systematically provides a framework for
extending the notions of classical thermodynamics such as work, heat and entropy …

Broken detailed balance and non-equilibrium dynamics in living systems: a review

FS Gnesotto, F Mura, J Gladrow… - Reports on Progress in …, 2018 - iopscience.iop.org
Living systems operate far from thermodynamic equilibrium. Enzymatic activity can induce
broken detailed balance at the molecular scale. This molecular scale breaking of detailed …

Thermodynamic uncertainty relation for biomolecular processes

AC Barato, U Seifert - Physical review letters, 2015 - APS
Biomolecular systems like molecular motors or pumps, transcription and translation
machinery, and other enzymatic reactions, can be described as Markov processes on a …

Single‐molecule sensors: challenges and opportunities for quantitative analysis

JJ Gooding, K Gaus - Angewandte Chemie International …, 2016 - Wiley Online Library
Measurement science has been converging to smaller and smaller samples, such that it is
now possible to detect single molecules. This Review focuses on the next generation of …

Equalities and inequalities: Irreversibility and the second law of thermodynamics at the nanoscale

C Jarzynski - Time: Poincaré Seminar 2010, 2012 - Springer
The reason we never observe violations of the second law of thermodynamics is a matter of
statistics: When very many degrees of freedom are involved, the odds are overwhelmingly …

Nanofluidics, from bulk to interfaces

L Bocquet, E Charlaix - Chemical Society Reviews, 2010 - pubs.rsc.org
Nanofluidics has emerged recently in the footsteps of microfluidics, following the quest for
scale reduction inherent to nanotechnologies. By definition, nanofluidics explores transport …

Optical tweezers—from calibration to applications: a tutorial

J Gieseler, JR Gomez-Solano, A Magazzù… - Advances in Optics …, 2021 - opg.optica.org
Since their invention in 1986 by Arthur Ashkin and colleagues, optical tweezers have
become an essential tool in several fields of physics, spectroscopy, biology …

The large deviation approach to statistical mechanics

H Touchette - Physics Reports, 2009 - Elsevier
The theory of large deviations is concerned with the exponential decay of probabilities of
large fluctuations in random systems. These probabilities are important in many fields of …

Recent advances in optical tweezers

JR Moffitt, YR Chemla, SB Smith… - Annu. Rev …, 2008 - annualreviews.org
It has been over 20 years since the pioneering work of Arthur Ashkin, and in the intervening
years, the field of optical tweezers has grown tremendously. Optical tweezers are now being …

Finite-time generalization of the thermodynamic uncertainty relation

P Pietzonka, F Ritort, U Seifert - Physical Review E, 2017 - APS
For fluctuating currents in nonequilibrium steady states, the recently discovered
thermodynamic uncertainty relation expresses a fundamental relation between their …