Novel community data in ecology-properties and prospects

F Hartig, N Abrego, A Bush, JM Chase… - Trends in Ecology & …, 2024 - cell.com
New technologies for monitoring biodiversity such as environmental (e) DNA, passive
acoustic monitoring, and optical sensors promise to generate automated spatiotemporal …

[HTML][HTML] ITS alchemy: on the use of ITS as a DNA marker in fungal ecology

H Kauserud - Fungal Ecology, 2023 - Elsevier
High throughput sequencing of PCR amplicons derived from environmental DNA (aka DNA
metabarcoding) has become an integral part of fungal ecology, enabling in-depth …

Extracting abundance information from DNA‐based data

M Luo, Y Ji, D Warton, DW Yu - Molecular Ecology Resources, 2023 - Wiley Online Library
The accurate extraction of species‐abundance information from DNA‐based data
(metabarcoding, metagenomics) could contribute usefully to diet analysis and food‐web …

Detecting and analysing intraspecific genetic variation with eDNA: From population genetics to species abundance

KJ Andres, DM Lodge, SA Sethi, J Andrés - Molecular Ecology, 2023 - Wiley Online Library
Advancements in environmental DNA (eDNA) approaches have allowed for rapid and
efficient species detections in diverse environments. Although most eDNA research is …

[HTML][HTML] Signal and noise in metabarcoding data

Z Gold, AO Shelton, HR Casendino, J Duprey… - Plos one, 2023 - journals.plos.org
Metabarcoding is a powerful molecular tool for simultaneously surveying hundreds to
thousands of species from a single sample, underpinning microbiome and environmental …

Three steps towards comparability and standardization among molecular methods for characterizing insect communities

E Iwaszkiewicz-Eggebrecht… - … Transactions of the …, 2024 - royalsocietypublishing.org
Molecular methods are currently some of the best-suited technologies for implementation in
insect monitoring. However, the field is developing rapidly and lacks agreement on …

Toward absolute abundance for conservation applications: Estimating the number of contributors via microhaplotype genotyping of mixed‐DNA samples

Y Shi, CM Dick, K Karpan, D Baetscher… - Molecular Ecology …, 2023 - Wiley Online Library
Molecular methods including metabarcoding and quantitative polymerase chain reaction
have shown promise for estimating species abundance by quantifying the concentration of …

Prey ration, temperature, and predator species influence digestion rates of prey DNA inferred from qPCR and metabarcoding

C Dick, WA Larson, K Karpan… - Molecular Ecology …, 2023 - Wiley Online Library
Diet analysis is a vital tool for understanding trophic interactions and is frequently used to
inform conservation and management. Molecular approaches can identify diet items that are …

Archived DNA reveals marine heatwave‐associated shifts in fish assemblages

Z Gold, RP Kelly, AO Shelton, AR Thompson… - Environmental …, 2024 - Wiley Online Library
Marine heatwaves can drive large‐scale shifts in marine ecosystems, but studying their
impacts on whole species assemblages is difficult. Analysis combining microscopic …

[HTML][HTML] A comparison of biomonitoring methodologies for surf zone fish communities

Z Gold, MKQ Koch, NK Schooler, KA Emery, JE Dugan… - PloS one, 2023 - journals.plos.org
Surf zones are highly dynamic marine ecosystems that are subject to increasing
anthropogenic and climatic pressures, posing multiple challenges for biomonitoring …