Novel community data in ecology-properties and prospects
New technologies for monitoring biodiversity such as environmental (e) DNA, passive
acoustic monitoring, and optical sensors promise to generate automated spatiotemporal …
acoustic monitoring, and optical sensors promise to generate automated spatiotemporal …
[HTML][HTML] ITS alchemy: on the use of ITS as a DNA marker in fungal ecology
H Kauserud - Fungal Ecology, 2023 - Elsevier
High throughput sequencing of PCR amplicons derived from environmental DNA (aka DNA
metabarcoding) has become an integral part of fungal ecology, enabling in-depth …
metabarcoding) has become an integral part of fungal ecology, enabling in-depth …
Extracting abundance information from DNA‐based data
The accurate extraction of species‐abundance information from DNA‐based data
(metabarcoding, metagenomics) could contribute usefully to diet analysis and food‐web …
(metabarcoding, metagenomics) could contribute usefully to diet analysis and food‐web …
Detecting and analysing intraspecific genetic variation with eDNA: From population genetics to species abundance
Advancements in environmental DNA (eDNA) approaches have allowed for rapid and
efficient species detections in diverse environments. Although most eDNA research is …
efficient species detections in diverse environments. Although most eDNA research is …
[HTML][HTML] Signal and noise in metabarcoding data
Z Gold, AO Shelton, HR Casendino, J Duprey… - Plos one, 2023 - journals.plos.org
Metabarcoding is a powerful molecular tool for simultaneously surveying hundreds to
thousands of species from a single sample, underpinning microbiome and environmental …
thousands of species from a single sample, underpinning microbiome and environmental …
Three steps towards comparability and standardization among molecular methods for characterizing insect communities
E Iwaszkiewicz-Eggebrecht… - … Transactions of the …, 2024 - royalsocietypublishing.org
Molecular methods are currently some of the best-suited technologies for implementation in
insect monitoring. However, the field is developing rapidly and lacks agreement on …
insect monitoring. However, the field is developing rapidly and lacks agreement on …
Toward absolute abundance for conservation applications: Estimating the number of contributors via microhaplotype genotyping of mixed‐DNA samples
Y Shi, CM Dick, K Karpan, D Baetscher… - Molecular Ecology …, 2023 - Wiley Online Library
Molecular methods including metabarcoding and quantitative polymerase chain reaction
have shown promise for estimating species abundance by quantifying the concentration of …
have shown promise for estimating species abundance by quantifying the concentration of …
Prey ration, temperature, and predator species influence digestion rates of prey DNA inferred from qPCR and metabarcoding
C Dick, WA Larson, K Karpan… - Molecular Ecology …, 2023 - Wiley Online Library
Diet analysis is a vital tool for understanding trophic interactions and is frequently used to
inform conservation and management. Molecular approaches can identify diet items that are …
inform conservation and management. Molecular approaches can identify diet items that are …
Archived DNA reveals marine heatwave‐associated shifts in fish assemblages
Marine heatwaves can drive large‐scale shifts in marine ecosystems, but studying their
impacts on whole species assemblages is difficult. Analysis combining microscopic …
impacts on whole species assemblages is difficult. Analysis combining microscopic …
[HTML][HTML] A comparison of biomonitoring methodologies for surf zone fish communities
Surf zones are highly dynamic marine ecosystems that are subject to increasing
anthropogenic and climatic pressures, posing multiple challenges for biomonitoring …
anthropogenic and climatic pressures, posing multiple challenges for biomonitoring …