The rapid, sensitive, and selective detection of foodborne pathogens is important to ensure
food safety. Culture medium‐based methods for bacteria detection have long been used …

Genome-scale metabolic modeling and simulation have been widely employed in biological
studies and biotechnological applications due to their powerful capabilities of estimating …

The study of the gene repertoires of microbial species, their pangenomes, has become a key
part of microbial evolution and functional genomics. Yet, the increasing number of genomes …

Currently, over 190 species in family Vibrionaceae, including not-yet-cultured taxa, have
been described and classified into over nine genera, in which the number of species has …

Background With the exponential growth of publicly available genome sequences,
pangenome analyses have provided increasingly complete pictures of genetic diversity for …

Compared with conventional comparative genomics, the recent studies in pan-genomics
have provided further insights into species genomic dynamics, taxonomy and identification …

Background Over the past two decades, Corynebacterium striatum has been increasingly
isolated from clinical cultures with most isolates showing increased antimicrobial resistance …

Various molecular techniques have been introduced for Salmonella detection. Loop-
mediated isothermal amplification (LAMP) is a simple and easy-to-operate detection method …

Pan-genome analyses of metagenome-assembled genomes (MAGs) may suffer from the
known issues with MAGs: fragmentation, incompleteness and contamination. Here, we …

Whole genome sequencing has increasingly become the essential method for studying the
genetic mechanisms of antimicrobial resistance and for surveillance of drug-resistant …