Long noncoding RNAs (lncRNAs) are products of pervasive transcription that closely
resemble messenger RNAs on the molecular level, yet function through largely unknown …

We introduce Single-cell Nanopore Spatial Transcriptomics (scNaST), a software suite to
facilitate the analysis of spatial gene expression from second-and third-generation …

Applications in omics research, such as comparative transcriptomics and proteomics,
require the knowledge of the species-specific gene sequence and benefit from a …

Background A comprehensive analysis of gene expression profiling across tissues can
provide necessary information for an in-depth understanding of their biological functions. We …

A comprehensive annotation of transcript isoforms in domesticated species is lacking.
Especially considering that transcriptome complexity and splicing patterns are not well …

Nematodes encompass more than 24,000 described species, which were discovered in
almost every ecological habitat, and make up> 80% of metazoan taxonomic diversity in …

Alternative splicing can lead to distinct protein isoforms. These can have different functions
in specific cells and tissues or in different developmental stages. In this study, we explored …

RNA sequencing is a powerful tool to analyze gene expression transcriptome wide.
However, RNA sequencing in general and especially the recently developed methods of …

Goldfish Carassius auratus is an ideal model for exploring fish morphology evolution.
Although genes underlying several ornamental traits have been identified, little is known …

Heart failure (HF) leads to a progressive increase in morbidity and mortality rates. This study
aimed to explore the transcriptional landscape during HF and identify differentially …