A reference cell tree will serve science better than a reference cell atlas

S Domcke, J Shendure - Cell, 2023 - cell.com
Single-cell biology is facing a crisis of sorts. Vast numbers of single-cell molecular profiles
are being generated, clustered and annotated. However, this is overwhelmingly ad hoc, and …

The origin and evolution of cell types

D Arendt, JM Musser, CVH Baker, A Bergman… - Nature Reviews …, 2016 - nature.com
Cell types are the basic building blocks of multicellular organisms and are extensively
diversified in animals. Despite recent advances in characterizing cell types, classification …

[HTML][HTML] Single-cell RNA-seq analysis of retinal development identifies NFI factors as regulating mitotic exit and late-born cell specification

BS Clark, GL Stein-O'Brien, F Shiau, GH Cannon… - Neuron, 2019 - cell.com
Precise temporal control of gene expression in neuronal progenitors is necessary for correct
regulation of neurogenesis and cell fate specification. However, the cellular heterogeneity of …

The types of retinal ganglion cells: current status and implications for neuronal classification

JR Sanes, RH Masland - Annual review of neuroscience, 2015 - annualreviews.org
In the retina, photoreceptors pass visual information to interneurons, which process it and
pass it to retinal ganglion cells (RGCs). Axons of RGCs then travel through the optic nerve …

Single-cell analysis of human retina identifies evolutionarily conserved and species-specific mechanisms controlling development

Y Lu, F Shiau, W Yi, S Lu, Q Wu, JD Pearson… - Developmental cell, 2020 - cell.com
The development of single-cell RNA sequencing (scRNA-seq) has allowed high-resolution
analysis of cell-type diversity and transcriptional networks controlling cell-fate specification …

A high-risk retinoblastoma subtype with stemness features, dedifferentiated cone states and neuronal/ganglion cell gene expression

J Liu, D Ottaviani, M Sefta, C Desbrousses… - Nature …, 2021 - nature.com
Retinoblastoma is the most frequent intraocular malignancy in children, originating from a
maturing cone precursor in the developing retina. Little is known on the molecular basis …

[HTML][HTML] Retinal organoids from pluripotent stem cells efficiently recapitulate retinogenesis

M Völkner, M Zschätzsch, M Rostovskaya, RW Overall… - Stem cell reports, 2016 - cell.com
The plasticity of pluripotent stem cells provides new possibilities for studying development,
degeneration, and regeneration. Protocols for the differentiation of retinal organoids from …

Molecular anatomy of the developing human retina

A Hoshino, R Ratnapriya, MJ Brooks, V Chaitankar… - Developmental cell, 2017 - cell.com
Clinical and genetic heterogeneity associated with retinal diseases makes stem-cell-based
therapies an attractive strategy for personalized medicine. However, we have limited …

[HTML][HTML] Stemming retinal regeneration with pluripotent stem cells

ZB Jin, ML Gao, WL Deng, KC Wu, S Sugita… - Progress in retinal and …, 2019 - Elsevier
Cell replacement therapy is a promising treatment for irreversible retinal cell death in diverse
diseases, such as age-related macular degeneration (AMD), Stargardt's disease, retinitis …

Neuronal specification in space and time

I Holguera, C Desplan - Science, 2018 - science.org
To understand how neurons assemble to form functional circuits, it is necessary to obtain a
detailed knowledge of their diversity and to define the developmental specification programs …