Coordination of microbial metabolism

V Chubukov, L Gerosa, K Kochanowski… - Nature Reviews …, 2014 - nature.com
Beyond fuelling cellular activities with building blocks and energy, metabolism also
integrates environmental conditions into intracellular signals. The underlying regulatory …

Systems biology of metabolism

J Nielsen - Annual review of biochemistry, 2017 - annualreviews.org
Metabolism is highly complex and involves thousands of different connected reactions; it is
therefore necessary to use mathematical models for holistic studies. The use of …

An integrated metabolic atlas of clear cell renal cell carcinoma

AA Hakimi, ED Reznik, CH Lee, CJ Creighton… - Cancer cell, 2016 - cell.com
Dysregulated metabolism is a hallmark of cancer, manifested through alterations in
metabolites. We performed metabolomic profiling on 138 matched clear cell renal cell …

Systems-level analysis of mechanisms regulating yeast metabolic flux

SR Hackett, VRT Zanotelli, W Xu, J Goya, JO Park… - Science, 2016 - science.org
INTRODUCTION Metabolism is among the most strongly conserved processes across all
domains of life and is crucial for both bioengineering and disease research, yet we still have …

Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro kcat measurements

D Davidi, E Noor, W Liebermeister… - Proceedings of the …, 2016 - National Acad Sciences
Turnover numbers, also known as k cat values, are fundamental properties of enzymes.
However, k cat data are scarce and measured in vitro, thus may not faithfully represent the in …

Complex regulation in a Comamonas platform for diverse aromatic carbon metabolism

RA Wilkes, J Waldbauer, A Carroll… - Nature Chemical …, 2023 - nature.com
Critical to a sustainable energy future are microbial platforms that can process aromatic
carbons from the largely untapped reservoir of lignin and plastic feedstocks. Comamonas …

[HTML][HTML] Absolute quantification of protein and mRNA abundances demonstrate variability in gene-specific translation efficiency in yeast

PJ Lahtvee, BJ Sánchez, A Smialowska, S Kasvandik… - Cell systems, 2017 - cell.com
Protein synthesis is the most energy-consuming process in a proliferating cell, and
understanding what controls protein abundances represents a key question in biology and …

How fast‐growing bacteria robustly tune their ribosome concentration to approximate growth‐rate maximization

E Bosdriesz, D Molenaar, B Teusink… - The FEBS …, 2015 - Wiley Online Library
Maximization of growth rate is an important fitness strategy for bacteria. Bacteria can achieve
this by expressing proteins at optimal concentrations, such that resources are not wasted …

Phenylalanine and Tyrosine as Exogenous Precursors of Wheat (Triticum aestivum L.) Secondary Metabolism through PAL-Associated Pathways

P Feduraev, L Skrypnik, A Riabova, A Pungin… - Plants, 2020 - mdpi.com
Reacting to environmental exposure, most higher plants activate secondary metabolic
pathways, such as the metabolism of phenylpropanoids. This pathway results in the …

Synthetic biology toolbox and chassis development in Bacillus subtilis

Y Liu, L Liu, J Li, G Du, J Chen - Trends in biotechnology, 2019 - cell.com
Based on technical advances in the sequencing and synthesis of genetic components as
well as the genome, significant progress has recently been made in developing synthetic …