N6‐methyladenosine RNA modification regulates cotton drought response in a Ca2+ and ABA‐dependent manner

B Li, M Zhang, W Sun, D Yue, Y Ma… - Plant Biotechnology …, 2023 - Wiley Online Library
Summary N6‐methyladenosine (m6A) is the most prevalent internal modification present in
mRNAs, and is considered to participate in a range of developmental and biological …

Structural insights into target DNA recognition by R2R3-MYB transcription factors

B Wang, Q Luo, Y Li, L Yin, N Zhou, X Li… - Nucleic acids …, 2020 - academic.oup.com
As the largest group of MYB family transcription factors, R2R3-MYB proteins play essential
roles during plant growth and development. However, the structural basis underlying how …

[HTML][HTML] A DNA adenine demethylase impairs PRC2-mediated repression of genes marked by a specific chromatin signature

Q Jia, X Zhang, Q Liu, J Li, W Wang, X Ma, B Zhu, S Li… - Genome Biology, 2023 - Springer
Abstract Background The Fe (II)-and α-ketoglutarate-dependent AlkB family dioxygenases
are implicated in nucleotide demethylation. AlkB homolog1 (ALKBH1) is shown to …

[PDF][PDF] Identification of a DNA N6-adenine methyltransferase complex and its impact on chromatin organization

LY Beh, GT Debelouchina, DM Clay, RE Thompson… - Cell, 2019 - cell.com
Summary DNA N6-adenine methylation (6mA) has recently been described in diverse
eukaryotes, spanning unicellular organisms to metazoa. Here, we report a DNA 6mA …

[HTML][HTML] iDNA6mA-Rice: a computational tool for detecting N6-methyladenine sites in rice

H Lv, FY Dao, ZX Guan, D Zhang, JX Tan… - Frontiers in …, 2019 - frontiersin.org
DNA N6-methyladenine (6mA) is a dominant DNA modification form and involved in many
biological functions. The accurate genome-wide identification of 6mA sites may increase …

Plant synthetic epigenomic engineering for crop improvement

L Yang, P Zhang, Y Wang, G Hu, W Guo, X Gu… - Science China Life …, 2022 - Springer
Efforts have been directed to redesign crops with increased yield, stress adaptability, and
nutritional value through synthetic biology—the application of engineering principles to …

MM-6mAPred: identifying DNA N6-methyladenine sites based on Markov model

C Pian, G Zhang, F Li, X Fan - Bioinformatics, 2020 - academic.oup.com
Motivation Recent studies have shown that DNA N6-methyladenine (6mA) plays an
important role in epigenetic modification of eukaryotic organisms. It has been found that 6mA …

A deep learning approach to automate whole‐genome prediction of diverse epigenomic modifications in plants

Y Wang, P Zhang, W Guo, H Liu, X Li, Q Zhang… - New …, 2021 - Wiley Online Library
Epigenetic modifications function in gene transcription, RNA metabolism, and other
biological processes. However, multiple factors currently limit the scientific utility of …

On the role of transposable elements in the regulation of gene expression and subgenomic interactions in crop genomes

RA Gill, F Scossa, GJ King, AA Golicz… - Critical Reviews in …, 2021 - Taylor & Francis
Transposable elements (TEs) represent a major and variable portion of plant genomes, and
recent progress in genetics and genomics has highlighted the importance of different TE …

A fungal dioxygenase CcTet serves as a eukaryotic 6mA demethylase on duplex DNA

Y Mu, L Zhang, J Hu, J Zhou, HW Lin, C He… - Nature Chemical …, 2022 - nature.com
Abstract N 6-methyladenosine (6mA) is a DNA modification that has recently been found to
play regulatory roles during mammalian early embryo development and mitochondrial …