Model based approaches to array CGH data analysis
SP Shah - 2008 - open.library.ubc.ca
DNA copy number alterations (CNAs) are genetic changes that can produce adverse effects
in numerous human diseases, including cancer. CNAs are segments of DNA that have been …
in numerous human diseases, including cancer. CNAs are segments of DNA that have been …
[HTML][HTML] A semiparametric Bayesian model for comparing DNA copy numbers
L Nieto-Barajas, Y Ji… - Brazilian journal of …, 2016 - ncbi.nlm.nih.gov
We propose a two-step method for the analysis of copy number data. We first define the
partitions of genome aberrations and conditional on the partitions we introduce a …
partitions of genome aberrations and conditional on the partitions we introduce a …
Assessing population level genetic instability via moving average
S McDaniel, J Minnier, RA Betensky, G Mohapatra… - Statistics in …, 2010 - Springer
Tumoral tissues tend to generally exhibit aberrations in DNA copy number that are
associated with the development and progression of cancer. Genotyping methods such as …
associated with the development and progression of cancer. Genotyping methods such as …
[PDF][PDF] A stochastic segmentation model for recurrent copy number alteration analysis
H Xing, Y Cai - Journal of Biometrics & Biostatistics, 2015 - ams.stonybrook.edu
Recurrent DNA copy number alterations (CNAs) are key genetic events in the study of
human genetics and disease. Analysis of recurrent DNA CNA data often involves the …
human genetics and disease. Analysis of recurrent DNA CNA data often involves the …
A flexible statistical method for detecting genomic copy-number changes using Hidden Markov Models with reversible jump MCMC
OM Rueda, R Diaz-Uriarte - 2006 - biostats.bepress.com
We have developed a statistical method for the analysis of array based CGH data to detect
genomic DNA copy number changes. Our method allows us to answer the biologically …
genomic DNA copy number changes. Our method allows us to answer the biologically …
Genome-wide Testing: Genomic Medicine: Commentary on the article by Bar-Shira et al. on page 353
SA McGhee, ERB McCabe - Pediatric Research, 2006 - nature.com
Karyotyping has been in use in genetics clinics for decades as the standard screening and
diagnostic test for major cytogenetic abnormalities. Many of these abnormalities involve …
diagnostic test for major cytogenetic abnormalities. Many of these abnormalities involve …
Change point methods in genetics
J Chen - Wiley StatsRef: Statistics Reference Online, 2014 - Wiley Online Library
In this review article, recent applications of change point methods in genetics will be
discussed. The latest advances in bio‐technology have provided new tools for scientists to …
discussed. The latest advances in bio‐technology have provided new tools for scientists to …
[PDF][PDF] A general graphical framework for detecting copy number variations
XL Yin, J Li - Proceedings of the eighth annual international …, 2009 - lifesciencessociety.org
Array comparative genomic hybridization (aCGH) allows identification of copy number
alterations across genomes. The key computational challenge in analyzing copy number …
alterations across genomes. The key computational challenge in analyzing copy number …
Stochastic Dynamic Models for Functional Data
B Zhu - 2010 - search.proquest.com
Functional data arise frequently in many fields of biomedical research as sequential
observations over time. The observations are generated by an unknown dynamic …
observations over time. The observations are generated by an unknown dynamic …
Comparative Genomic Hybridization (CGH) in Genotoxicology
A Baumgartner, V Hartleb, JD Taylor - Genotoxicity Assessment: Methods …, 2019 - Springer
In the past two decades, comparative genomic hybridization (CGH) and array CGH have
become indispensable tools in clinical diagnostics and toxicological risk assessment …
become indispensable tools in clinical diagnostics and toxicological risk assessment …