Machine learning for antimicrobial resistance prediction: current practice, limitations, and clinical perspective
Antimicrobial resistance (AMR) is a global health crisis that poses a great threat to modern
medicine. Effective prevention strategies are urgently required to slow the emergence and …
medicine. Effective prevention strategies are urgently required to slow the emergence and …
[HTML][HTML] Tackling antibiotic resistance with compounds of natural origin: A comprehensive review
Drug-resistant bacteria pose a serious threat to human health worldwide. Current antibiotics
are losing efficacy and new antimicrobial agents are urgently needed. Living organisms are …
are losing efficacy and new antimicrobial agents are urgently needed. Living organisms are …
Evolutionary mechanisms shaping the maintenance of antibiotic resistance
Antibiotics target essential cellular functions but bacteria can become resistant by acquiring
either exogenous resistance genes or chromosomal mutations. Resistance mutations …
either exogenous resistance genes or chromosomal mutations. Resistance mutations …
Plasmid persistence: costs, benefits, and the plasmid paradox
AC Carroll, A Wong - Canadian journal of microbiology, 2018 - cdnsciencepub.com
Plasmids are extrachromosomal DNA elements that can be found throughout bacteria, as
well as in other domains of life. Nonetheless, the evolutionary processes underlying the …
well as in other domains of life. Nonetheless, the evolutionary processes underlying the …
[HTML][HTML] Environmental modulation of global epistasis in a drug resistance fitness landscape
J Diaz-Colunga, A Sanchez… - Nature Communications, 2023 - nature.com
Interactions between mutations (epistasis) can add substantial complexity to genotype-
phenotype maps, hampering our ability to predict evolution. Yet, recent studies have shown …
phenotype maps, hampering our ability to predict evolution. Yet, recent studies have shown …
[HTML][HTML] Learning the pattern of epistasis linking genotype and phenotype in a protein
FJ Poelwijk, M Socolich, R Ranganathan - Nature communications, 2019 - nature.com
Understanding the pattern of epistasis—the non-independence of mutations—is critical for
relating genotype and phenotype. However, the combinatorial complexity of potential …
relating genotype and phenotype. However, the combinatorial complexity of potential …
[HTML][HTML] Revisiting antibiotic resistance: mechanistic foundations to evolutionary outlook
CM Hasan, D Dutta, ANT Nguyen - Antibiotics, 2021 - mdpi.com
Antibiotics are the pivotal pillar of contemporary healthcare and have contributed towards its
advancement over the decades. Antibiotic resistance emerged as a critical warning to public …
advancement over the decades. Antibiotic resistance emerged as a critical warning to public …
[HTML][HTML] High-throughput laboratory evolution reveals evolutionary constraints in Escherichia coli
T Maeda, J Iwasawa, H Kotani, N Sakata… - Nature …, 2020 - nature.com
Understanding the constraints that shape the evolution of antibiotic resistance is critical for
predicting and controlling drug resistance. Despite its importance, however, a systematic …
predicting and controlling drug resistance. Despite its importance, however, a systematic …
Hypermutator Pseudomonas aeruginosa exploits multiple genetic pathways to develop multidrug resistance during long-term infections in the airways of cystic fibrosis …
CA Colque, AG Albarracín Orio, S Feliziani… - Antimicrobial agents …, 2020 - Am Soc Microbiol
Pseudomonas aeruginosa exploits intrinsic and acquired resistance mechanisms to resist
almost every antibiotic used in chemotherapy. Antimicrobial resistance in P. aeruginosa …
almost every antibiotic used in chemotherapy. Antimicrobial resistance in P. aeruginosa …
Unpredictability of the Fitness Effects of Antimicrobial Resistance Mutations Across Environments in Escherichia coli
The evolution of antimicrobial resistance (AMR) in bacteria is a major public health concern,
and antibiotic restriction is often implemented to reduce the spread of resistance. These …
and antibiotic restriction is often implemented to reduce the spread of resistance. These …