[HTML][HTML] Regulation Systems of Bacteria such as Escherichia coli in Response to Nutrient Limitation and Environmental Stresses

K Shimizu - Metabolites, 2013 - mdpi.com
An overview was made to understand the regulation system of a bacterial cell such as
Escherichia coli in response to nutrient limitation such as carbon, nitrogen, phosphate …

Small RNAs controlling iron metabolism

E Masse, H Salvail, G Desnoyers, M Arguin - Current opinion in …, 2007 - Elsevier
Iron is one of the most important metals in the metabolism of many organisms, including
bacteria, in which it serves as a cofactor in multiple enzymatic reactions. Most of the earlier …

[HTML][HTML] Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli

SW Seo, D Kim, H Latif, EJ O'Brien, R Szubin… - Nature …, 2014 - nature.com
The ferric uptake regulator (Fur) plays a critical role in the transcriptional regulation of iron
metabolism. However, the full regulatory potential of Fur remains undefined. Here we …

[PDF][PDF] A 3′ external transcribed spacer in a tRNA transcript acts as a sponge for small RNAs to prevent transcriptional noise

D Lalaouna, MC Carrier, S Semsey, JS Brouard… - Molecular cell, 2015 - cell.com
During ribosomal and transfer RNA maturation, external transcribed spacer (ETS) and
internal transcribed spacer (ITS) sequences are excised and, as non-functional by-products …

[HTML][HTML] A quasi-integral controller for adaptation of genetic modules to variable ribosome demand

HH Huang, Y Qian, D Del Vecchio - Nature communications, 2018 - nature.com
The behavior of genetic circuits is often poorly predictable. A gene's expression level is not
only determined by the intended regulators, but also affected by changes in ribosome …

A quantitative comparison of sRNA‐based and protein‐based gene regulation

P Mehta, S Goyal, NS Wingreen - Molecular systems biology, 2008 - embopress.org
Small non‐coding RNAs (sRNAs) have important functions as genetic regulators in
prokaryotes. sRNAs act post‐transcriptionally through complementary pairing with target …

A heritable iron memory enables decision-making in Escherichia coli

S Bhattacharyya, N Bhattarai… - Proceedings of the …, 2023 - National Acad Sciences
The importance of memory in bacterial decision-making is relatively unexplored. We show
here that a prior experience of swarming is remembered when Escherichia coli encounters a …

H-NOX–mediated nitric oxide sensing modulates symbiotic colonization by Vibrio fischeri

Y Wang, YS Dufour, HK Carlson… - Proceedings of the …, 2010 - National Acad Sciences
The bioluminescent bacterium Vibrio fischeri initiates a specific, persistent symbiosis in the
light organ of the squid Euprymna scolopes. During the early stages of colonization, V …

Deciphering the transcriptional regulatory logic of amino acid metabolism

BK Cho, S Federowicz, YS Park, K Zengler… - Nature chemical …, 2012 - nature.com
Although metabolic networks have been reconstructed on a genome scale, the
corresponding reconstruction and integration of governing transcriptional regulatory …

Simplified models of biological networks

K Sneppen, S Krishna, S Semsey - Annual review of biophysics, 2010 - annualreviews.org
The function of living cells is controlled by complex regulatory networks that are built of a
wide diversity of interacting molecular components. The sheer size and intricacy of …