[HTML][HTML] The origin and early evolution of plants

AMC Bowles, CJ Williamson, TA Williams… - Trends in Plant …, 2023 - cell.com
Plant (archaeplastid) evolution has transformed the biosphere, but we are only now
beginning to learn how this took place through comparative genomics, phylogenetics, and …

[HTML][HTML] Pyrenoids: CO2-fixing phase separated liquid organelles

J Barrett, P Girr, LCM Mackinder - … et Biophysica Acta (BBA)-Molecular Cell …, 2021 - Elsevier
Pyrenoids are non-membrane bound organelles found in chloroplasts of algae and hornwort
plants that can be seen by light-microscopy. Pyrenoids are formed by liquid-liquid phase …

Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions

B Pucker, I Irisarri, J de Vries, B Xu - Quantitative Plant Biology, 2022 - cambridge.org
Third-generation long-read sequencing is transforming plant genomics. Oxford Nanopore
Technologies and Pacific Biosciences are offering competing long-read sequencing …

Phytochrome evolution in 3D: deletion, duplication, and diversification

NC Rockwell, JC Lagarias - New Phytologist, 2020 - Wiley Online Library
Canonical plant phytochromes are master regulators of photomorphogenesis and the shade
avoidance response. They are also part of a widespread superfamily of photoreceptors with …

[HTML][HTML] RHO of plant signaling was established early in streptophyte evolution

H Mulvey, L Dolan - Current Biology, 2023 - cell.com
The algal ancestors of land plants underwent a transition from a unicellular to a multicellular
body plan. 1 This transition likely took place early in streptophyte evolution, sometime after …

A chromosome‐level genome assembly of Pyropia haitanensis (Bangiales, Rhodophyta)

M Cao, K Xu, X Yu, G Bi, Y Liu, F Kong… - Molecular ecology …, 2020 - Wiley Online Library
Abstract Pyropia haitanensis (Bangiales, Rhodophyta), a major economically important
marine crop, is also considered as an ideal research model of Rhodophyta to address …

Cryogenian origins of multicellularity in Archaeplastida

AMC Bowles, CJ Williamson, TA Williams… - Genome Biology and …, 2024 - academic.oup.com
Earth was impacted by global glaciations during the Cryogenian (720 to 635 million years
ago; Ma), events invoked to explain both the origins of multicellularity in Archaeplastida and …

[HTML][HTML] Genome-wide comparative analyses of GATA transcription factors among 19 Arabidopsis ecotype genomes: Intraspecific characteristics of GATA …

M Kim, H Xi, J Park - PloS one, 2021 - journals.plos.org
GATA transcription factors (TFs) are widespread eukaryotic regulators whose DNA-binding
domain is a class IV zinc finger motif (CX2CX17-20CX2C) followed by a basic region. Due to …

[HTML][HTML] MarFERReT, an open-source, version-controlled reference library of marine microbial eukaryote functional genes

RD Groussman, S Blaskowski, SN Coesel… - Scientific Data, 2023 - nature.com
Metatranscriptomics generates large volumes of sequence data about transcribed genes in
natural environments. Taxonomic annotation of these datasets depends on availability of …

[HTML][HTML] Codon usage pattern of the ancestor of green plants revealed through Rhodophyta

H Yao, T Li, Z Ma, X Wang, L Xu, Y Zhang, Y Cai… - BMC genomics, 2023 - Springer
Rhodophyta are among the closest known relatives of green plants. Studying the codons of
their genomes can help us understand the codon usage pattern and characteristics of the …