Small molecule metabolites: discovery of biomarkers and therapeutic targets
S Qiu, Y Cai, H Yao, C Lin, Y Xie, S Tang… - Signal Transduction and …, 2023 - nature.com
Metabolic abnormalities lead to the dysfunction of metabolic pathways and metabolite
accumulation or deficiency which is well-recognized hallmarks of diseases. Metabolite …
accumulation or deficiency which is well-recognized hallmarks of diseases. Metabolite …
Spatial multi-omics analyses of the tumor immune microenvironment
WC Hsieh, BR Budiarto, YF Wang, CY Lin… - Journal of Biomedical …, 2022 - Springer
In the past decade, single-cell technologies have revealed the heterogeneity of the tumor-
immune microenvironment at the genomic, transcriptomic, and proteomic levels and have …
immune microenvironment at the genomic, transcriptomic, and proteomic levels and have …
SODB facilitates comprehensive exploration of spatial omics data
Spatial omics technologies generate wealthy but highly complex datasets. Here we present
Spatial Omics DataBase (SODB), a web-based platform providing both rich data resources …
Spatial Omics DataBase (SODB), a web-based platform providing both rich data resources …
Mass spectrometry imaging: the rise of spatially resolved single-cell omics
Increasing evidence suggests that the spatial distribution of biomolecules within cells is a
critical component in deciphering single-cell molecular heterogeneity. State-of-the-art single …
critical component in deciphering single-cell molecular heterogeneity. State-of-the-art single …
Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data with SpaTalk
Spatially resolved transcriptomics provides genetic information in space toward elucidation
of the spatial architecture in intact organs and the spatially resolved cell-cell …
of the spatial architecture in intact organs and the spatially resolved cell-cell …
Single-cell lipidomics enabled by dual-polarity ionization and ion mobility-mass spectrometry imaging
Single-cell (SC) analysis provides unique insight into individual cell dynamics and cell-to-
cell heterogeneity. Here, we utilize trapped ion mobility separation coupled with dual …
cell heterogeneity. Here, we utilize trapped ion mobility separation coupled with dual …
High spatial resolution mass spectrometry imaging for spatial metabolomics: advances, challenges, and future perspectives
S Ma, Y Leng, X Li, Y Meng, Z Yin, W Hang - TrAC Trends in Analytical …, 2023 - Elsevier
Spatial metabolomics is an emerging field of omics research that has enabled localizing
small molecules in tissues and cells. Mass spectrometry imaging (MSI) technologies allow …
small molecules in tissues and cells. Mass spectrometry imaging (MSI) technologies allow …
Streamlining spatial omics data analysis with Pysodb
Advances in spatial omics technologies have improved the understanding of cellular
organization in tissues, leading to the generation of complex and heterogeneous data and …
organization in tissues, leading to the generation of complex and heterogeneous data and …
SOTIP is a versatile method for microenvironment modeling with spatial omics data
The rapidly developing spatial omics generated datasets with diverse scales and modalities.
However, most existing methods focus on modeling dynamics of single cells while ignore …
However, most existing methods focus on modeling dynamics of single cells while ignore …
Rethinking the initial changes in subarachnoid haemorrhage: Focusing on real-time metabolism during early brain injury
Over the last two decades, neurological researchers have uncovered many
pathophysiological mechanisms associated with subarachnoid haemorrhage (SAH), with …
pathophysiological mechanisms associated with subarachnoid haemorrhage (SAH), with …