Twenty years of plant genome sequencing: achievements and challenges

Y Sun, L Shang, QH Zhu, L Fan, L Guo - Trends in Plant Science, 2022 - cell.com
Publication of the complete genome sequence of Arabidopsis thaliana, the first plant
reference genome, in December 2000 heralded the beginning of the plant genome era …

Era of gapless plant genomes: innovations in sequencing and mapping technologies revolutionize genomics and breeding

N Gladman, S Goodwin, K Chougule… - Current opinion in …, 2023 - Elsevier
Highlights•Sequencing technology has enabled gapless T2T plant genome
assemblies.•Gapless genomes are superior compared with nongapless …

GENESPACE tracks regions of interest and gene copy number variation across multiple genomes

JT Lovell, A Sreedasyam, ME Schranz, M Wilson… - elife, 2022 - elifesciences.org
The development of multiple chromosome-scale reference genome sequences in many
taxonomic groups has yielded a high-resolution view of the patterns and processes of …

TaCol-B5 modifies spike architecture and enhances grain yield in wheat

X Zhang, H Jia, T Li, J Wu, R Nagarajan, L Lei… - Science, 2022 - science.org
Spike architecture influences grain yield in wheat. We report the map-based cloning of a
gene determining the number of spikelet nodes per spike in common wheat. The cloned …

An unusual tandem kinase fusion protein confers leaf rust resistance in wheat

Y Wang, M Abrouk, S Gourdoupis, DH Koo… - Nature …, 2023 - nature.com
The introgression of chromosome segments from wild relatives is an established strategy to
enrich crop germplasm with disease-resistance genes. Here we use mutagenesis and …

Dissection of a rapidly evolving wheat resistance gene cluster by long-read genome sequencing accelerated the cloning of Pm69

Y Li, ZZ Wei, H Sela, L Govta, V Klymiuk… - Plant …, 2024 - cell.com
Gene cloning in repeat-rich polyploid genomes remains challenging. Here, we describe a
strategy for overcoming major bottlenecks in cloning of the powdery mildew resistance gene …

Chromosome-scale genome assembly of the transformation-amenable common wheat cultivar 'Fielder'

K Sato, F Abe, M Mascher, G Haberer… - DNA …, 2021 - academic.oup.com
We have established a high-quality, chromosome-level genome assembly for the hexaploid
common wheat cultivar 'Fielder', an American, soft, white, pastry-type wheat released in …

Discovery of isoflavone phytoalexins in wheat reveals an alternative route to isoflavonoid biosynthesis

G Polturak, RC Misra, A El-Demerdash, C Owen… - Nature …, 2023 - nature.com
Isoflavones are a group of phenolic compounds mostly restricted to plants of the legume
family, where they mediate important interactions with plant-associated microbes, including …

Sequencing trait-associated mutations to clone wheat rust-resistance gene YrNAM

F Ni, Y Zheng, X Liu, Y Yu, G Zhang, L Epstein… - Nature …, 2023 - nature.com
Stripe (yellow) rust, caused by Puccinia striiformis f. sp. tritici (Pst), can significantly affect
wheat production. Cloning resistance genes is critical for efficient and effective breeding of …

WheatOmics: A platform combining multiple omics data to accelerate functional genomics studies in wheat

S Ma, M Wang, J Wu, W Guo, Y Chen, G Li, Y Wang… - Molecular plant, 2021 - cell.com
Mold-breaking progress in whole-genome sequencing and rapid accumulation of multi-
omics data have revolutionized the research strategies of functional genomics in wheat …