The structural biochemistry of the superoxide dismutases

JJP Perry, DS Shin, ED Getzoff, JA Tainer - Biochimica et Biophysica Acta …, 2010 - Elsevier
The discovery of superoxide dismutases (SODs), which convert superoxide radicals to
molecular oxygen and hydrogen peroxide, has been termed the most important discovery of …

Fluorinated amino acids: compatibility with native protein structures and effects on protein–protein interactions

M Salwiczek, EK Nyakatura, UIM Gerling… - Chemical Society …, 2012 - pubs.rsc.org
Fluorinated analogues of the canonical α-L-amino acids have gained widespread attention
as building blocks that may endow peptides and proteins with advantageous biophysical …

CH–π hydrogen bonds in biological macromolecules

M Nishio, Y Umezawa, J Fantini, MS Weiss… - Physical Chemistry …, 2014 - pubs.rsc.org
This is a sequel to the previous Perspective “The CH–π hydrogen bond in chemistry.
Conformation, supramolecules, optical resolution and interactions involving carbohydrates” …

The CH/π hydrogen bond in chemistry. Conformation, supramolecules, optical resolution and interactions involving carbohydrates

M Nishio - Physical Chemistry Chemical Physics, 2011 - pubs.rsc.org
The CH/π hydrogen bond is an attractive molecular force occurring between a soft acid and
a soft base. Contribution from the dispersion energy is important in typical cases where …

Relevance of weak hydrogen bonds in the conformation of organic compounds and bioconjugates: evidence from recent experimental data and high-level ab initio …

O Takahashi, Y Kohno, M Nishio - Chemical reviews, 2010 - ACS Publications
Organic chemists tend to consider the conformation of compounds as a consequence of
repulsive steric interactions. In other words,“the steric effect” means “repulsive” in many …

Aromatic–proline interactions: electronically tunable CH/π interactions

NJ Zondlo - Accounts of chemical research, 2013 - ACS Publications
Proline residues have unique roles in protein folding, structure, and function. Proline and the
aromatic amino acids comprise the encoded cyclic protein residues. Aromatic protein side …

CH/π hydrogen bonds in organic and organometallic chemistry

M Nishio, Y Umezawa, K Honda, S Tsuboyama… - …, 2009 - pubs.rsc.org
This treatise is an update to a preceding highlight (CH/π hydrogen bonds in crystals)
published in this journal 5 years ago (M. Nishio, CrystEngComm, 2004, 6, 130–156). After …

The Ramachandran plots of glycine and pre-proline

BK Ho, R Brasseur - BMC structural biology, 2005 - Springer
Abstract Background The Ramachandran plot is a fundamental tool in the analysis of protein
structures. Of the 4 basic types of Ramachandran plots, the interactions that determine the …

Intrinsically disordered proteins/regions and insight into their biomolecular interactions

P Chakrabarti, D Chakravarty - Biophysical Chemistry, 2022 - Elsevier
Proteins may vary from being rigid to having flexible regions to being completely disordered,
either as an intrinsically disordered protein (IDP) or having specific intrinsically disordered …

C–H⋯ O and other weak hydrogen bonds. From crystal engineering to virtual screening

GR Desiraju - Chemical Communications, 2005 - pubs.rsc.org
Hydrogen bonds, X–H⋯ A, formed by weak donors (X= C) and acceptors (A= π system) were
generally dismissed as being of little consequence before and even during the 1970s. This …