Feature fusion-based food protein subcellular prediction for drug composition

H Byeon, M Shabaz, JVN Ramesh, AK Dutta, R Vijay… - Food Chemistry, 2024 - Elsevier
The structure and function of dietary proteins, as well as their subcellular prediction, are
critical for designing and developing new drug compositions and understanding the …

CEGSO: boosting essential proteins prediction by integrating protein complex, gene expression, gene ontology, subcellular localization and orthology information

W Zhang, X Xue, C Xie, Y Li, J Liu, H Chen… - Interdisciplinary Sciences …, 2021 - Springer
Essential proteins are assumed to be an indispensable element in sustaining normal
physiological function and crucial to drug design and disease diagnosis. The discovery of …

Temporal-spatial analysis of the essentiality of hub proteins in protein-protein interaction networks

X Meng, W Li, J Xiang, HD Bedru… - … on Network Science …, 2022 - ieeexplore.ieee.org
Hubs are generally defined as nodes with a high degree centrality, and they are important
for maintaining the stability of complex networks. Previous studies have shown that hub …

[HTML][HTML] Identification of essential proteins based on edge features and the fusion of multiple-source biological information

P Liu, C Liu, Y Mao, J Guo, F Liu, W Cai, F Zhao - BMC bioinformatics, 2023 - Springer
Background A major current focus in the analysis of protein–protein interaction (PPI) data is
how to identify essential proteins. As massive PPI data are available, this warrants the …

[HTML][HTML] Comparative analysis of gene ontology-based semantic similarity measurements for the application of identifying essential proteins

X Xue, W Zhang, A Fan - Plos one, 2023 - journals.plos.org
Identifying key proteins from protein-protein interaction (PPI) networks is one of the most
fundamental and important tasks for computational biologists. However, the protein …

A node ranking method based on multiple layers for dynamic protein interaction networks

B Li, L Pan, J Sun, H Wang, J Jiang, B Yang… - IEEE Access, 2022 - ieeexplore.ieee.org
Constructing dynamic protein interaction networks (DPIN) is a common way to improve
identification accuracy of essential proteins. The existing methods usually aggregate DPIN …

[HTML][HTML] Method for essential protein prediction based on a novel weighted protein-domain interaction network

Z Meng, L Kuang, Z Chen, Z Zhang, Y Tan, X Li… - Frontiers in …, 2021 - frontiersin.org
In recent years a number of calculative models based on protein-protein interaction (PPI)
networks have been proposed successively. However, due to false positives, false …

[HTML][HTML] Method for identifying essential proteins by key features of proteins in a novel protein-domain network

X He, L Kuang, Z Chen, Y Tan, L Wang - Frontiers in Genetics, 2021 - frontiersin.org
In recent years, due to low accuracy and high costs of traditional biological experiments,
more and more computational models have been proposed successively to infer potential …

[HTML][HTML] A seed expansion-based method to identify essential proteins by integrating protein–protein interaction sub-networks and multiple biological characteristics

H Zhao, G Liu, X Cao - BMC bioinformatics, 2023 - Springer
Background The identification of essential proteins is of great significance in biology and
pathology. However, protein–protein interaction (PPI) data obtained through high …

Essential proteins discovery based on dominance relationship and neighborhood similarity centrality

G Li, X Luo, Z Hu, J Wu, W Peng, J Liu… - Health Information Science …, 2023 - Springer
Essential proteins play a vital role in development and reproduction of cells. The
identification of essential proteins helps to understand the basic survival of cells. Due to time …