Barley: a translational model for adaptation to climate change
Barley (H ordeum vulgare ssp. vulgare) is an excellent model for understanding agricultural
responses to climate change. Its initial domestication over 10 millennia ago and subsequent …
responses to climate change. Its initial domestication over 10 millennia ago and subsequent …
Genomic selection in plant breeding: knowledge and prospects
AJ Lorenz, S Chao, FG Asoro, EL Heffner… - Advances in …, 2011 - Elsevier
Abstract “Genomic selection,” the ability to select for even complex, quantitative traits based
on marker data alone, has arisen from the conjunction of new high-throughput marker …
on marker data alone, has arisen from the conjunction of new high-throughput marker …
[HTML][HTML] CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers
Background The problem of supervised DNA sequence classification arises in several fields
of computational molecular biology. Although this problem has been extensively studied, it is …
of computational molecular biology. Although this problem has been extensively studied, it is …
[HTML][HTML] Development and evaluation of a barley 50k iSelect SNP array
MM Bayer, P Rapazote-Flores, M Ganal… - Frontiers in plant …, 2017 - frontiersin.org
High-throughput genotyping arrays continue to be an attractive, cost-effective alternative to
sequencing based approaches. We have developed a new 50k Illumina Infinium iSelect …
sequencing based approaches. We have developed a new 50k Illumina Infinium iSelect …
[HTML][HTML] Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach
Advancements in next-generation sequencing technology have enabled whole genome re-
sequencing in many species providing unprecedented discovery and characterization of …
sequencing in many species providing unprecedented discovery and characterization of …
A physical, genetic and functional sequence assembly of the barley genome.
Barley (Hordeum vulgare L.) is among the world's earliest domesticated and most important
crop plants. It is diploid with a large haploid genome of 5.1 gigabases (Gb). Here we present …
crop plants. It is diploid with a large haploid genome of 5.1 gigabases (Gb). Here we present …
[HTML][HTML] Development and evaluation of SoySNP50K, a high-density genotyping array for soybean
The objective of this research was to identify single nucleotide polymorphisms (SNPs) and to
develop an Illumina Infinium BeadChip that contained over 50,000 SNPs from soybean …
develop an Illumina Infinium BeadChip that contained over 50,000 SNPs from soybean …
[HTML][HTML] EukProt: a database of genome-scale predicted proteins across the diversity of eukaryotes
DJ Richter, C Berney, JFH Strassert… - Peer Community …, 2022 - peercommunityjournal.org
EukProt is a database of published and publicly available predicted protein sets selected to
represent the breadth of eukaryotic diversity, currently including 993 species from all major …
represent the breadth of eukaryotic diversity, currently including 993 species from all major …
SNP discovery through next-generation sequencing and its applications
S Kumar, TW Banks, S Cloutier - Crop Breeding, 2016 - taylorfrancis.com
Molecular markers are widely used in plant genetic research and breeding. Single
Nucleotide Polymorphisms (SNPs) are currently the marker of choice due to their large …
Nucleotide Polymorphisms (SNPs) are currently the marker of choice due to their large …
[HTML][HTML] Genome-wide association studies for agronomical traits in a world wide spring barley collection
Background Genome-wide association studies (GWAS) based on linkage disequilibrium
(LD) provide a promising tool for the detection and fine mapping of quantitative trait loci …
(LD) provide a promising tool for the detection and fine mapping of quantitative trait loci …