iFLAS: positive‐unlabeled learning facilitates full‐length transcriptome‐based identification and functional exploration of alternatively spliced isoforms in maize
The advent of full‐length transcriptome sequencing technologies has accelerated the
discovery of novel splicing isoforms. However, existing alternative splicing (AS) tools are …
discovery of novel splicing isoforms. However, existing alternative splicing (AS) tools are …
ADDI: Recommending alternatives for drug–drug interactions with negative health effects
Investigating the interactions among various drugs is an indispensable issue in the field of
computational biology. Scientific literature represents a rich source for the retrieval of …
computational biology. Scientific literature represents a rich source for the retrieval of …
Good machine learning practices: Learnings from the modern pharmaceutical discovery enterprise
V Makarov, C Chabbert, E Koletou… - Computers in Biology …, 2024 - Elsevier
Abstract Machine Learning (ML) and Artificial Intelligence (AI) have become an integral part
of the drug discovery and development value chain. Many teams in the pharmaceutical …
of the drug discovery and development value chain. Many teams in the pharmaceutical …
Interpretability and accessibility of machine learning in selected food processing, agriculture and health applications
Artificial Intelligence (AI) and its data-centric branch of machine learning (ML) have greatly
evolved over the last few decades. However, as AI is used increasingly in real world use …
evolved over the last few decades. However, as AI is used increasingly in real world use …
A multi-objective evolutionary algorithm for robust positive-unlabeled learning
J Qiu, Q Tang, M Tan, K Li, J Xie, X Cai, F Cheng - Information Sciences, 2024 - Elsevier
Positive and unlabeled (PU) learning is to learn a binary classifier with good generalization
ability from PU data. A variety of PU learning algorithms with promising performance have …
ability from PU data. A variety of PU learning algorithms with promising performance have …
DTIP-TC2A: An analytical framework for drug-target interactions prediction methods
Identifying drug-target interactions through computational methods is raised an important
and key step in the process of drug discovery and drug-oriented research during the last …
and key step in the process of drug discovery and drug-oriented research during the last …
A loss matrix-based alternating optimization method for sparse PU learning
J Qiu, X Cai, L Zhang, F Cheng - Swarm and Evolutionary Computation, 2022 - Elsevier
Positive and unlabeled (PU) learning is an important research topic in machine learning
area, whose aim is to learn a good classifier from PU data. Due to its wide applications, a …
area, whose aim is to learn a good classifier from PU data. Due to its wide applications, a …
Sure: screening unlabeled samples for reliable negative samples based on reinforcement learning
For many classification tasks, particularly in the bioinformatics field, only experimentally
validated positive samples are available, and experimentally validated negative samples …
validated positive samples are available, and experimentally validated negative samples …
Predicting drug-drug interactions using heterogeneous graph attention networks
Drug-Drug Interactions (DDIs) can alter a drug's efficacy and lead to adverse effects.
Predicting potential DDIs during clinical trials is challenging; thus, computational methods …
Predicting potential DDIs during clinical trials is challenging; thus, computational methods …
PU‐GNN: A Positive‐Unlabeled Learning Method for Polypharmacy Side‐Effects Detection Based on Graph Neural Networks
A Keshavarz, A Lakizadeh - International Journal of Intelligent …, 2024 - Wiley Online Library
The simultaneous use of multiple drugs, known as polypharmacy, heightens the risks of
harmful side effects due to drug‐drug interactions. Predicting these interactions is crucial in …
harmful side effects due to drug‐drug interactions. Predicting these interactions is crucial in …