Convolutional neural networks for classification of Alzheimer's disease: Overview and reproducible evaluation

J Wen, E Thibeau-Sutre, M Diaz-Melo… - Medical image …, 2020 - Elsevier
Numerous machine learning (ML) approaches have been proposed for automatic
classification of Alzheimer's disease (AD) from brain imaging data. In particular, over 30 …

Toward defining deep brain stimulation targets in MNI space: a subcortical atlas based on multimodal MRI, histology and structural connectivity

S Ewert, P Plettig, N Li, MM Chakravarty, DL Collins… - Neuroimage, 2018 - Elsevier
Three-dimensional atlases of subcortical brain structures are valuable tools to reference
anatomy in neuroscience and neurology. For instance, they can be used to study the …

Neuromaps: structural and functional interpretation of brain maps

RD Markello, JY Hansen, ZQ Liu, V Bazinet, G Shafiei… - Nature …, 2022 - nature.com
Imaging technologies are increasingly used to generate high-resolution reference maps of
brain structure and function. Comparing experimentally generated maps to these reference …

The Allen mouse brain common coordinate framework: a 3D reference atlas

Q Wang, SL Ding, Y Li, J Royall, D Feng, P Lesnar… - Cell, 2020 - cell.com
Recent large-scale collaborations are generating major surveys of cell types and
connections in the mouse brain, collecting large amounts of data across modalities, spatial …

Standardizing workflows in imaging transcriptomics with the abagen toolbox

RD Markello, A Arnatkeviciute, JB Poline, BD Fulcher… - elife, 2021 - elifesciences.org
Gene expression fundamentally shapes the structural and functional architecture of the
human brain. Open-access transcriptomic datasets like the Allen Human Brain Atlas provide …

Strategic infarct locations for post-stroke cognitive impairment: a pooled analysis of individual patient data from 12 acute ischaemic stroke cohorts

NA Weaver, HJ Kuijf, HP Aben, J Abrigo… - The Lancet …, 2021 - thelancet.com
Background Post-stroke cognitive impairment (PSCI) occurs in approximately half of people
in the first year after stroke. Infarct location is a potential determinant of PSCI, but a …

The human brainnetome atlas: a new brain atlas based on connectional architecture

L Fan, H Li, J Zhuo, Y Zhang, J Wang, L Chen… - Cerebral …, 2016 - academic.oup.com
The human brain atlases that allow correlating brain anatomy with psychological and
cognitive functions are in transition from ex vivo histology-based printed atlases to digital …

Measuring shared responses across subjects using intersubject correlation

SA Nastase, V Gazzola, U Hasson… - Social cognitive and …, 2019 - academic.oup.com
Our capacity to jointly represent information about the world underpins our social
experience. By leveraging one individual's brain activity to model another's, we can measure …

Fast symmetric diffeomorphic image registration with convolutional neural networks

TCW Mok, A Chung - … of the IEEE/CVF conference on …, 2020 - openaccess.thecvf.com
Diffeomorphic deformable image registration is crucial in many medical image studies, as it
offers unique, special features including topology preservation and invertibility of the …

SCT: Spinal Cord Toolbox, an open-source software for processing spinal cord MRI data

B De Leener, S Lévy, SM Dupont, VS Fonov, N Stikov… - Neuroimage, 2017 - Elsevier
For the past 25 years, the field of neuroimaging has witnessed the development of several
software packages for processing multi-parametric magnetic resonance imaging (mpMRI) to …