Phase transitions of associative biomacromolecules

RV Pappu, SR Cohen, F Dar, M Farag, M Kar - Chemical Reviews, 2023 - ACS Publications
Multivalent proteins and nucleic acids, collectively referred to as multivalent associative
biomacromolecules, provide the driving forces for the formation and compositional …

Perspective: Advances, challenges, and insight for predictive coarse-grained models

WG Noid - The Journal of Physical Chemistry B, 2023 - ACS Publications
By averaging over atomic details, coarse-grained (CG) models provide profound
computational and conceptual advantages for studying soft materials. In particular, bottom …

Multiresolution graph transformers and wavelet positional encoding for learning long-range and hierarchical structures

NK Ngo, TS Hy, R Kondor - The Journal of Chemical Physics, 2023 - pubs.aip.org
Contemporary graph learning algorithms are not well-suited for large molecules since they
do not consider the hierarchical interactions among the atoms, which are essential to …

Open macromolecular genome: Generative design of synthetically accessible polymers

S Kim, CM Schroeder, NE Jackson - ACS Polymers Au, 2023 - ACS Publications
A grand challenge in polymer science lies in the predictive design of new polymeric
materials with targeted functionality. However, de novo design of functional polymers is …

[HTML][HTML] The current science of sequence-defined macromolecules

K Hakobyan, BB Noble, J Xu - Progress in Polymer Science, 2023 - Elsevier
A fundamental endeavour in macromolecular science is the control of molecular-level
complexity, including molecular weight distribution, end groups and architecture. Since the …

Mechanical Slowing Down of Network-Forming Phase Separation of Polymer Solutions

J Yuan, M Tateno, H Tanaka - ACS nano, 2023 - ACS Publications
Phase separation is a fundamental phenomenon leading to spatially heterogeneous
material distribution, which is critical in nature, biology, material science, and industry. In …

Computational design of peptides for biomaterials applications

Y Wang, KJ Stebe, C de la Fuente-Nunez… - ACS Applied Bio …, 2023 - ACS Publications
Computer-aided molecular design and protein engineering emerge as promising and active
subjects in bioengineering and biotechnological applications. On one hand, due to the …

Comparison of friction parametrization from dynamics and material properties for a coarse-grained polymer melt

LC Johnson, FR Phelan Jr - The Journal of Physical Chemistry B, 2023 - ACS Publications
In this work, we extend an approach to coarse-grained (CG) modeling for polymer melts in
which the conservative potential is parametrized using the iterative Boltzmann inversion (IBI) …

[HTML][HTML] Engineered nanocomposites through embedding of smaller “organic inorganic” nanoparticles in thermoplastic Poly (2-Vinylpyridine) polymer matrix

S Gupta, A Henson - Composites Part B: Engineering, 2024 - Elsevier
Polymer nanocomposites (PNCs) are significant for modern and future applications owing to
their multifunctionality promoted by morphology and tailored interfaces between the …

Dynamical coarse-grained models of molecular liquids and their ideal and non-ideal mixtures

M Tripathy, V Klippenstein… - The Journal of Chemical …, 2023 - pubs.aip.org
Coarse-grained (CG) simulation models of condensed-phase systems can be derived with
well-established methods that perform coarsegraining in space and provide an effective …