The chloroplast genome: a review

J Dobrogojski, M Adamiec, R Luciński - Acta Physiologiae Plantarum, 2020 - Springer
Chloroplasts are the metabolically active, semi-autonomous organelles found in plants,
algae and cyanobacteria. Their main function is to carry out the photosynthesis process …

Spatial features and functional implications of plant 3D genome organization

K Domb, N Wang, G Hummel… - Annual Review of Plant …, 2022 - annualreviews.org
The advent of high-throughput sequencing-based methods for chromatin conformation,
accessibility, and immunoprecipitation assays has been a turning point in 3D genomics …

MSH1 is required for maintenance of the low mutation rates in plant mitochondrial and plastid genomes

Z Wu, G Waneka, AK Broz, CR King… - Proceedings of the …, 2020 - National Acad Sciences
Mitochondrial and plastid genomes in land plants exhibit some of the slowest rates of
sequence evolution observed in any eukaryotic genome, suggesting an exceptional ability …

Characterisation of the complete mitochondrial genome of Taraxacum mongolicum revealed five repeat-mediated recombinations

M Jiang, Y Ni, J Li, C Liu - Plant Cell Reports, 2023 - Springer
Key message We reported the mitochondrial genome of Taraxacum mongolicum for the first
time. Five pairs of repeats that can mediate recombination were validated, leading to …

[HTML][HTML] The minicircular and extremely heteroplasmic mitogenome of the holoparasitic plant Rhopalocnemis phalloides

R Yu, C Sun, Y Zhong, Y Liu, MV Sanchez-Puerta… - Current Biology, 2022 - cell.com
The plastid and nuclear genomes of parasitic plants exhibit deeply altered architectures, 1–
13 whereas the few examined mitogenomes range from deeply altered to conventional. 14 …

[HTML][HTML] Primase promotes the competition between transcription and replication on the same template strand resulting in DNA damage

W Zhang, Z Yang, W Wang, Q Sun - nature communications, 2024 - nature.com
Abstract Transcription-replication conflicts (TRCs), especially Head-On TRCs (HO-TRCs)
can introduce R-loops and DNA damage, however, the underlying mechanisms are still …

Comparative analysis of the chloroplast and mitochondrial genomes of Saposhnikovia divaricata revealed the possible transfer of plastome repeat regions into the …

Y Ni, J Li, H Chen, J Yue, P Chen, C Liu - BMC genomics, 2022 - Springer
Abstract Background Saposhnikovia divaricata (Turcz.) Schischk. is a perennial herb whose
dried roots are commonly used as a source of traditional medicines. To elucidate the …

Mitochondrial RNase H1 activity regulates R-loop homeostasis to maintain genome integrity and enable early embryogenesis in Arabidopsis

L Cheng, W Wang, Y Yao, Q Sun - PLoS biology, 2021 - journals.plos.org
Plant mitochondrial genomes undergo frequent homologous recombination (HR). Ectopic
HR activity is inhibited by the HR surveillance pathway, but the underlying regulatory …

Mitochondrial gene defects in Arabidopsis can broadly affect mitochondrial gene expression through copy number

H Ayabe, A Toyoda, A Iwamoto, N Tsutsumi… - Plant …, 2023 - academic.oup.com
How mitochondria regulate the expression of their genes is poorly understood, partly
because methods have not been developed for stably transforming mitochondrial genomes …

The first complete mitochondrial genome of Carex (C. breviculmis): a significantly expanded genome with highly structural variations

S Xu, K Teng, H Zhang, J Wu, L Duan, H Zhang, H Wen… - Planta, 2023 - Springer
Main conclusion The first complete mitochondrial genome of Carex (C. breviculmis) was
sequenced and assembled, and its genomic signature was analyzed and the possible …