The logic of virus evolution
Viruses are obligate intracellular parasites. Despite their dependence on host cells, viruses
are evolutionarily autonomous, with their own genomes and evolutionary trajectories locked …
are evolutionarily autonomous, with their own genomes and evolutionary trajectories locked …
The mechanism of the phage-encoded protein antibiotic from ΦX174
The historically important phage ΦX174 kills its host bacteria by encoding a 91-residue
protein antibiotic called protein E. Using single-particle electron cryo–microscopy, we …
protein antibiotic called protein E. Using single-particle electron cryo–microscopy, we …
[HTML][HTML] Hepatitis B and circadian rhythm of the liver
The circadian rhythm in humans is determined by the central clock located in the
hypothalamus's suprachiasmatic nucleus, and it synchronizes the peripheral clocks in other …
hypothalamus's suprachiasmatic nucleus, and it synchronizes the peripheral clocks in other …
A large-scale genome-based survey of acidophilic bacteria suggests that genome streamlining is an adaption for life at low pH
The genome streamlining theory suggests that reduction of microbial genome size optimizes
energy utilization in stressful environments. Although this hypothesis has been explored in …
energy utilization in stressful environments. Although this hypothesis has been explored in …
Are there hidden genes in DNA/RNA vaccines?
CA Beaudoin, M Bartas, A Volná, P Pečinka… - Frontiers in …, 2022 - frontiersin.org
Due to the fast global spreading of the Severe Acute Respiratory Syndrome Coronavirus–2
(SARS-CoV-2), prevention and treatment options are direly needed in order to control …
(SARS-CoV-2), prevention and treatment options are direly needed in order to control …
Structural conservation of HBV-like capsid proteins over hundreds of millions of years despite the shift from non-enveloped to enveloped life-style
The discovery of nackednaviruses provided new insight into the evolutionary history of the
hepatitis B virus (HBV): The common ancestor of HBV and nackednaviruses was non …
hepatitis B virus (HBV): The common ancestor of HBV and nackednaviruses was non …
Variable proportions of phylogenetic clustering and low levels of antiviral drug resistance among the major hbv sub-genotypes in the middle east and North Africa
Hepatitis B virus (HBV) infection remains a major public health threat in the Middle East and
North Africa (MENA). Phylogenetic analysis of HBV can be helpful to study the putative …
North Africa (MENA). Phylogenetic analysis of HBV can be helpful to study the putative …
Effects of the Expression of Random Sequence Clones on Growth and Transcriptome Regulation in Escherichia coli
Comparative genomic analyses have provided evidence that new genetic functions can
emerge out of random nucleotide sequences. Here, we apply a direct experimental …
emerge out of random nucleotide sequences. Here, we apply a direct experimental …
Emergence of two distinct spatial folds in a pair of plant virus proteins encoded by nested genes
EG Legarda, SF Elena, AR Mushegian - Journal of Biological Chemistry, 2024 - ASBMB
Virus genomes may encode overlapping or nested open reading frames that increase their
coding capacity. It is not known whether the constraints on spatial structures of the two …
coding capacity. It is not known whether the constraints on spatial structures of the two …
[HTML][HTML] Selection for immune evasion in SARS-CoV-2 revealed by high-resolution epitope mapping and sequence analysis
Here, we exploit a deep serological profiling strategy coupled with an integrated,
computational framework for the analysis of SARS-CoV-2 humoral immune responses …
computational framework for the analysis of SARS-CoV-2 humoral immune responses …