The logic of virus evolution

EV Koonin, VV Dolja, M Krupovic - Cell host & microbe, 2022 - cell.com
Viruses are obligate intracellular parasites. Despite their dependence on host cells, viruses
are evolutionarily autonomous, with their own genomes and evolutionary trajectories locked …

The mechanism of the phage-encoded protein antibiotic from ΦX174

AK Orta, N Riera, YE Li, S Tanaka, HG Yun, L Klaic… - Science, 2023 - science.org
The historically important phage ΦX174 kills its host bacteria by encoding a 91-residue
protein antibiotic called protein E. Using single-particle electron cryo–microscopy, we …

[HTML][HTML] Hepatitis B and circadian rhythm of the liver

I Skrlec, J Talapko - World journal of gastroenterology, 2022 - ncbi.nlm.nih.gov
The circadian rhythm in humans is determined by the central clock located in the
hypothalamus's suprachiasmatic nucleus, and it synchronizes the peripheral clocks in other …

A large-scale genome-based survey of acidophilic bacteria suggests that genome streamlining is an adaption for life at low pH

D Cortez, G Neira, C González, E Vergara… - Frontiers in …, 2022 - frontiersin.org
The genome streamlining theory suggests that reduction of microbial genome size optimizes
energy utilization in stressful environments. Although this hypothesis has been explored in …

Are there hidden genes in DNA/RNA vaccines?

CA Beaudoin, M Bartas, A Volná, P Pečinka… - Frontiers in …, 2022 - frontiersin.org
Due to the fast global spreading of the Severe Acute Respiratory Syndrome Coronavirus–2
(SARS-CoV-2), prevention and treatment options are direly needed in order to control …

Structural conservation of HBV-like capsid proteins over hundreds of millions of years despite the shift from non-enveloped to enveloped life-style

S Pfister, J Rabl, T Wiegand, S Mattei, AA Malär… - Nature …, 2023 - nature.com
The discovery of nackednaviruses provided new insight into the evolutionary history of the
hepatitis B virus (HBV): The common ancestor of HBV and nackednaviruses was non …

Variable proportions of phylogenetic clustering and low levels of antiviral drug resistance among the major hbv sub-genotypes in the middle east and North Africa

RY Athamneh, A Arıkan, M Sayan, A Mahafzah… - Pathogens, 2021 - mdpi.com
Hepatitis B virus (HBV) infection remains a major public health threat in the Middle East and
North Africa (MENA). Phylogenetic analysis of HBV can be helpful to study the putative …

Effects of the Expression of Random Sequence Clones on Growth and Transcriptome Regulation in Escherichia coli

D Bhave, D Tautz - Genes, 2021 - mdpi.com
Comparative genomic analyses have provided evidence that new genetic functions can
emerge out of random nucleotide sequences. Here, we apply a direct experimental …

Emergence of two distinct spatial folds in a pair of plant virus proteins encoded by nested genes

EG Legarda, SF Elena, AR Mushegian - Journal of Biological Chemistry, 2024 - ASBMB
Virus genomes may encode overlapping or nested open reading frames that increase their
coding capacity. It is not known whether the constraints on spatial structures of the two …

[HTML][HTML] Selection for immune evasion in SARS-CoV-2 revealed by high-resolution epitope mapping and sequence analysis

A N'Guessan, S Kailasam, F Mostefai, R Poujol… - Iscience, 2023 - cell.com
Here, we exploit a deep serological profiling strategy coupled with an integrated,
computational framework for the analysis of SARS-CoV-2 humoral immune responses …