Plant pan-genomics and its applications
J Shi, Z Tian, J Lai, X Huang - Molecular Plant, 2023 - cell.com
Plant genomes are so highly diverse that a substantial proportion of genomic sequences are
not shared among individuals. The variable DNA sequences, along with the conserved core …
not shared among individuals. The variable DNA sequences, along with the conserved core …
Natural variation in crops: realized understanding, continuing promise
Crops feed the world's population and shape human civilization. The improvement of crop
productivity has been ongoing for almost 10,000 years and has evolved from an experience …
productivity has been ongoing for almost 10,000 years and has evolved from an experience …
Convergent selection of a WD40 protein that enhances grain yield in maize and rice
W Chen, L Chen, X Zhang, N Yang, J Guo, M Wang… - Science, 2022 - science.org
A better understanding of the extent of convergent selection among crops could greatly
improve breeding programs. We found that the quantitative trait locus KRN2 in maize and its …
improve breeding programs. We found that the quantitative trait locus KRN2 in maize and its …
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
We report de novo genome assemblies, transcriptomes, annotations, and methylomes for
the 26 inbreds that serve as the founders for the maize nested association mapping …
the 26 inbreds that serve as the founders for the maize nested association mapping …
De novo genome assembly and analyses of 12 founder inbred lines provide insights into maize heterosis
B Wang, M Hou, J Shi, L Ku, W Song, C Li, Q Ning… - Nature Genetics, 2023 - nature.com
Hybrid maize displays superior heterosis and contributes over 30% of total worldwide cereal
production. However, the molecular mechanisms of heterosis remain obscure. Here we …
production. However, the molecular mechanisms of heterosis remain obscure. Here we …
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
Background Sequencing technology and assembly algorithms have matured to the point
that high-quality de novo assembly is possible for large, repetitive genomes. Current …
that high-quality de novo assembly is possible for large, repetitive genomes. Current …
De novo domestication of wild tomato using genome editing
A Zsögön, T Čermák, ER Naves, MM Notini… - Nature …, 2018 - nature.com
Breeding of crops over millennia for yield and productivity has led to reduced genetic
diversity. As a result, beneficial traits of wild species, such as disease resistance and stress …
diversity. As a result, beneficial traits of wild species, such as disease resistance and stress …
Stepwise selection on homeologous PRR genes controlling flowering and maturity during soybean domestication
S Lu, L Dong, C Fang, S Liu, L Kong, Q Cheng… - Nature Genetics, 2020 - nature.com
Adaptive changes in plant phenology are often considered to be a feature of the so-called
'domestication syndrome'that distinguishes modern crops from their wild progenitors, but …
'domestication syndrome'that distinguishes modern crops from their wild progenitors, but …
Widespread long-range cis-regulatory elements in the maize genome
Genetic mapping studies on crops suggest that agronomic traits can be controlled by gene–
distal intergenic loci. Despite the biological importance and the potential agronomic utility of …
distal intergenic loci. Despite the biological importance and the potential agronomic utility of …
Teosinte ligule allele narrows plant architecture and enhances high-density maize yields
J Tian, C Wang, J Xia, L Wu, G Xu, W Wu, D Li, W Qin… - Science, 2019 - science.org
Increased planting densities have boosted maize yields. Upright plant architecture facilitates
dense planting. Here, we cloned UPA1 (Upright Plant Architecture1) and UPA2, two …
dense planting. Here, we cloned UPA1 (Upright Plant Architecture1) and UPA2, two …