CTCF as a regulator of alternative splicing: new tricks for an old player

AB Alharbi, U Schmitz, CG Bailey… - Nucleic acids …, 2021 - academic.oup.com
Three decades of research have established the CCCTC-binding factor (CTCF) as a
ubiquitously expressed chromatin organizing factor and master regulator of gene …

MicroRNA29a regulates IL-33-mediated tissue remodelling in tendon disease

NL Millar, DS Gilchrist, M Akbar, JH Reilly… - Nature …, 2015 - nature.com
MicroRNA (miRNA) has the potential for cross-regulation and functional integration of
discrete biological processes during complex physiological events. Utilizing the common …

Measuring the tail: Methods for poly (A) tail profiling

A Brouze, PS Krawczyk… - Wiley Interdisciplinary …, 2023 - Wiley Online Library
Abstract The 3′‐end poly (A) tail is an important and potent feature of most mRNA
molecules that affects mRNA fate and translation efficiency. Polyadenylation is a …

POINT technology illuminates the processing of polymerase-associated intact nascent transcripts

R Sousa-Luis, G Dujardin, I Zukher, H Kimura… - Molecular cell, 2021 - cell.com
Mammalian chromatin is the site of both RNA polymerase II (Pol II) transcription and coupled
RNA processing. However, molecular details of such co-transcriptional mechanisms remain …

[HTML][HTML] DNA methylation regulates alternative polyadenylation via CTCF and the cohesin complex

V Nanavaty, EW Abrash, C Hong, S Park, EE Fink, Z Li… - Molecular cell, 2020 - cell.com
Dysregulation of DNA methylation and mRNA alternative cleavage and polyadenylation
(APA) are both prevalent in cancer and have been studied as independent processes. We …

Transposable elements drive rapid phenotypic variation in Capsella rubella

XM Niu, YC Xu, ZW Li, YT Bian… - Proceedings of the …, 2019 - National Acad Sciences
Rapid phenotypic changes in traits of adaptive significance are crucial for organisms to
thrive in changing environments. How such phenotypic variation is achieved rapidly, despite …

Transcriptome-wide analyses of CstF64–RNA interactions in global regulation of mRNA alternative polyadenylation

C Yao, J Biesinger, J Wan, L Weng… - Proceedings of the …, 2012 - National Acad Sciences
Cleavage stimulation factor 64 kDa (CstF64) is an essential pre-mRNA 3′ processing factor
and an important regulator of alternative polyadenylation (APA). Here we characterized …

Alternative polyadenylation: new insights from global analyses

Y Shi - Rna, 2012 - rnajournal.cshlp.org
Recent studies have revealed widespread mRNA alternative polyadenylation (APA) in
eukaryotes and its dynamic spatial and temporal regulation. APA not only generates …

Fip1 regulates mRNA alternative polyadenylation to promote stem cell self‐renewal

B Lackford, C Yao, GM Charles, L Weng… - The EMBO …, 2014 - embopress.org
Abstract mRNA alternative polyadenylation (APA) plays a critical role in post‐transcriptional
gene control and is highly regulated during development and disease. However, the …

[HTML][HTML] Disengaging polymerase: terminating RNA polymerase II transcription in budding yeast

HE Mischo, NJ Proudfoot - Biochimica et Biophysica Acta (BBA)-Gene …, 2013 - Elsevier
Termination of transcription by RNA polymerase II requires two distinct processes: The
formation of a defined 3′ end of the transcribed RNA, as well as the disengagement of RNA …