Protein-protein interactions: methods for detection and analysis

EM Phizicky, S Fields - Microbiological reviews, 1995 - Am Soc Microbiol
The function and activity of a protein are often modulated by other proteins with which it
interacts. This review is intended as a practical guide to the analysis of such protein-protein …

Bacterial RNA polymerases: the wholo story

KS Murakami, SA Darst - Current opinion in structural biology, 2003 - Elsevier
Recent structural and biophysical results have provided unprecedented insights into the
structure and function of the bacterial RNA polymerase holoenzyme as it goes through the …

High-resolution molecular discrimination by RNA

RD Jenison, SC Gill, A Pardi, B Polisky - Science, 1994 - science.org
Species of RNA that bind with high affinity and specificity to the bronchodilator theophylline
were identified by selection from an oligonucleotide library. One RNA molecule binds to …

Oligonucleotide inhibitors of human thrombin that bind distinct epitopes

DM Tasset, MF Kubik, W Steiner - Journal of molecular biology, 1997 - Elsevier
Thrombin, a multifunctional serine protease, recognizes multiple macromolecular substrates
and plays a key role in both procoagulant and anticoagulant functions. The substrate …

2′-Fluoropyrimidine RNA-based aptamers to the 165-amino acid form of vascular endothelial growth factor (VEGF165): Inhibition of receptor binding and VEGF …

J Ruckman, LS Green, J Beeson, S Waugh… - Journal of Biological …, 1998 - ASBMB
Vascular endothelial growth factor (VEGF) has been implicated in the pathological induction
of new blood vessel growth in a variety of proliferative disorders. Using the SELEX process …

Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching

A Revyakin, C Liu, RH Ebright, TR Strick - Science, 2006 - science.org
Using single-molecule DNA nanomanipulation, we show that abortive initiation involves
DNA “scrunching”—in which RNA polymerase (RNAP) remains stationary and unwinds and …

Competition among seven Escherichia coli σ subunits: relative binding affinities to the core RNA polymerase

H Maeda, N Fujita, A Ishihama - Nucleic acids research, 2000 - academic.oup.com
Seven different species of the RNA polymerase σ subunit exist in Escherichia coli, each
binding to a single species of the core enzyme and thereby directing transcription of a …

Transcription termination at intrinsic terminators: the role of the RNA hairpin.

KS Wilson, PH von Hippel - Proceedings of the National …, 1995 - National Acad Sciences
Intrinsic termination of transcription in Escherichia coli involves the formation of an RNA
hairpin in the nascent RNA. This hairpin plays a central role in the release of the transcript …

Growth-rate-dependent partitioning of RNA polymerases in bacteria

S Klumpp, T Hwa - Proceedings of the National Academy of …, 2008 - National Acad Sciences
Physiological changes that result in changes in bacterial gene expression are often
accompanied by changes in the growth rate for fast adapting enteric bacteria. Because the …

Functions of the gene products of Escherichia coli

M Riley - Microbiological reviews, 1993 - Am Soc Microbiol
A list of currently identified gene products of Escherichia coli is given, together with a
bibliography that provides pointers to the literature on each gene product. A scheme to …