Computational approaches for detecting disease-associated alternative splicing events

J Liu, CX Lin, X Zhang, Z Li, W Huang… - Briefings in …, 2023 - academic.oup.com
Alternative splicing (AS) is a key transcriptional regulation pathway. Recent studies have
shown that AS events are associated with the occurrence of complex diseases. Various …

[HTML][HTML] Gene association classification for autism spectrum disorder: Leveraging gene embedding and differential gene expression profiles to identify disease-related …

A Suratanee, K Plaimas - Applied Sciences, 2023 - mdpi.com
Identifying genes associated with autism spectrum disorder (ASD) is crucial for
understanding the underlying mechanisms of the disorder. However, ASD is a complex …

Bulk and single‐cell alternative splicing analyses reveal roles of TRA2B in myogenic differentiation

G Chen, J Chen, L Qi, Y Yin, Z Lin, H Wen… - Cell …, 2024 - Wiley Online Library
Alternative splicing (AS) disruption has been linked to disorders of muscle development, as
well as muscular atrophy. However, the precise changes in AS patterns that occur during …

[HTML][HTML] Revisiting the development of cerebellar inhibitory interneurons in the light of single-cell genetic analyses

K Schilling - Histochemistry and Cell Biology, 2024 - Springer
The present review aims to provide a short update of our understanding of the inhibitory
interneurons of the cerebellum. While these cells constitute but a minority of all cerebellar …

[HTML][HTML] Interrogations of single-cell RNA splicing landscapes with SCASL define new cell identities with physiological relevance

X Xiang, Y He, Z Zhang, X Yang - Nature Communications, 2024 - nature.com
RNA splicing shapes the gene regulatory programs that underlie various physiological and
disease processes. Here, we present the SCASL (single-cell clustering based on alternative …

单细胞测序及其在动物繁殖机理研究中的作用

林广, 毛帅翔, 柳广斌 - 中国畜牧兽医, 2024 - chvm.net
单细胞测序是一种基于单个细胞层面上获取自身细胞全部遗传信息的高通量测序技术,
揭示了单个细胞的细胞内动力学, 并通过数百万个细胞的高维目录回答生物学问题 …

Predicting the Structural Impact of Human Alternative Splicing

Y Song, C Zhang, GS Omenn, MJ O'Meara, JD Welch - bioRxiv, 2023 - biorxiv.org
Protein structure prediction with neural networks is a powerful new method for linking protein
sequence, structure, and function, but structures have generally been predicted for only a …

Mining alternative splicing patterns in scRNA-seq data using scASfind

Y Song, G Parada, JTH Lee, M Hemberg - bioRxiv, 2023 - biorxiv.org
Single-cell RNA-seq is widely used for transcriptome profiling, but most analyses have
focused on gene-level events, with much less attention devoted to alternative splicing. Here …