Coenzyme A: back in action

R Leonardi, YM Zhang, CO Rock, S Jackowski - Progress in lipid research, 2005 - Elsevier
Coenzyme A (CoA) is a ubiquitous essential cofactor that plays a central role in the
metabolism of carboxylic acids, including short-and long-chain fatty acids. In the last few …

Ageing, oxidative stress and cancer: paradigms in parallax

CC Benz, C Yau - Nature Reviews Cancer, 2008 - nature.com
Two paradigms central to geroscience research are that aging is associated with increased
oxidative stress and increased cancer risk. Therefore, it could be deduced that cancers …

Plant cis-acting regulatory DNA elements (PLACE) database: 1999

K Higo, Y Ugawa, M Iwamoto… - Nucleic acids …, 1999 - academic.oup.com
Abstract Place (http://www. dna. affrc. go. jp/htdocs/PLACE/) is a database of nucleotide
sequence motifs found in plant cis-acting regulatory DNA elements. Motifs were extracted …

VISTA: computational tools for comparative genomics

KA Frazer, L Pachter, A Poliakov, EM Rubin… - Nucleic acids …, 2004 - academic.oup.com
Abstract Comparison of DNA sequences from different species is a fundamental method for
identifying functional elements in genomes. Here, we describe the VISTA family of tools …

TRANSFAC ® : transcriptional regulation, from patterns to profiles

V Matys, E Fricke, R Geffers, E Gößling… - Nucleic acids …, 2003 - academic.oup.com
The TRANSFAC® database on eukaryotic transcriptional regulation, comprising data on
transcription factors, their target genes and regulatory binding sites, has been extended and …

Ecto-5′-nucleotidase (CD73) regulation by hypoxia-inducible factor-1 mediates permeability changes in intestinal epithelia

K Synnestvedt, GT Furuta… - The Journal of …, 2002 - Am Soc Clin Investig
Under conditions of limited oxygen availability (hypoxia), multiple cell types release adenine
nucleotides in the form of ATP, ADP, and AMP. Extracellular AMP is metabolized to …

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

T Shiraki, S Kondo, S Katayama… - Proceedings of the …, 2003 - National Acad Sciences
We introduce cap analysis gene expression (CAGE), which is based on preparation and
sequencing of concatamers of DNA tags deriving from the initial 20 nucleotides from 5′ end …

Regulation of PTEN transcription by p53

V Stambolic, D MacPherson, D Sas, Y Lin, B Snow… - Molecular cell, 2001 - cell.com
PTEN tumor suppressor is frequently mutated in human cancers and is a negative regulator
of PI3′ K/PKB/Akt-dependent cellular survival. Investigation of the human genomic PTEN …

SKN-1 links C. elegans mesendodermal specification to a conserved oxidative stress response

JH An, TK Blackwell - Genes & development, 2003 - genesdev.cshlp.org
During the earliest stages of Caenorhabditis elegans embryogenesis, the transcription factor
SKN-1 initiates development of the digestive system and other mesendodermal tissues …

PlantCARE, a plant cis-acting regulatory element database

S Rombauts, P Déhais, M Van Montagu… - Nucleic acids …, 1999 - academic.oup.com
PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors.
Besides the transcription motifs found on a sequence, it also offers a link to the EMBL entry …