Haplotype-resolved genomes of wild octoploid progenitors illuminate genomic diversifications from wild relatives to cultivated strawberry

X Jin, H Du, C Zhu, H Wan, F Liu, J Ruan, JP Mower… - Nature Plants, 2023 - nature.com
Strawberry is an emerging model for studying polyploid genome evolution and rapid
domestication of fruit crops. Here we report haplotype-resolved genomes of two wild …

Variant calling in polyploids for population and quantitative genetics

AR Phillips - Applications in Plant Sciences, 2024 - Wiley Online Library
Advancements in genome assembly and sequencing technology have made whole genome
sequence (WGS) data and reference genomes accessible to study polyploid species …

Dynamics of accessible chromatin regions and subgenome dominance in octoploid strawberry

C Fang, N Jiang, SJ Teresi, AE Platts… - Nature …, 2024 - nature.com
Subgenome dominance has been reported in diverse allopolyploid species, where genes
from one subgenome are preferentially retained and are more highly expressed than those …

Advances in genomics and genome editing for improving strawberry (Fragaria ×ananassa)

K Vondracek, F Altpeter, T Liu, S Lee - Frontiers in Genetics, 2024 - frontiersin.org
The cultivated strawberry, Fragaria× ananassa, is a recently domesticated fruit species of
economic interest worldwide. As such, there is significant interest in continuous varietal …

Little evidence for homoeologous gene conversion and homoeologous exchange events in Gossypium allopolyploids

JL Conover, CE Grover, J Sharbrough… - American Journal of …, 2024 - Wiley Online Library
Premise A complicating factor in analyzing allopolyploid genomes is the possibility of
physical interactions between homoeologous chromosomes during meiosis, resulting in …

On the origin of strawberries

A Liston - Nature Plants, 2023 - nature.com
On the origin of strawberries | Nature Plants Skip to main content Thank you for visiting
nature.com. You are using a browser version with limited support for CSS. To obtain the best …

Genomic data provides insights into the evolutionary history and adaptive differentiation of two tetraploid strawberries

H Lin, L Chen, C Cai, J Ma, J Li, TL Ashman… - Horticulture …, 2024 - academic.oup.com
Over the decades, evolutionists and ecologists have shown intense interest in the role of
polyploidization in plant evolution. Without clear knowledge of the diploid ancestor (s) of …

Exploration of a European-centered strawberry diversity panel provides markers and candidate genes for the control of fruit quality traits

A Prohaska, P Rey-Serra, J Petit, A Petit… - Horticulture …, 2024 - academic.oup.com
Fruit quality traits are major breeding targets in cultivated strawberry (Fragaria× ananassa).
Taking into account the requirements of both growers and consumers when selecting high …

Subgenome phasing for complex allopolyploidy: case-based benchmarking and recommendations

RG Zhang, HY Shang, KH Jia… - Briefings in …, 2024 - academic.oup.com
Accurate subgenome phasing is crucial for understanding the origin, evolution and adaptive
potential of polyploid genomes. SubPhaser and WGDI software are two common …

[PDF][PDF] Phylogenomic inference, divergence-time calibration, and methods for characterizing reticulate evolution

S Bjornson, N Upham, H Verbruggen, J Steenwyk - 2023 - drive.google.com
Phylogenomics has enriched our understanding of the Tree of Life. Non-vertical modes of
evolution—such as hybridization/introgression and horizontal gene transfer—deviate from a …