Haplotype-resolved genomes of wild octoploid progenitors illuminate genomic diversifications from wild relatives to cultivated strawberry
Strawberry is an emerging model for studying polyploid genome evolution and rapid
domestication of fruit crops. Here we report haplotype-resolved genomes of two wild …
domestication of fruit crops. Here we report haplotype-resolved genomes of two wild …
Variant calling in polyploids for population and quantitative genetics
AR Phillips - Applications in Plant Sciences, 2024 - Wiley Online Library
Advancements in genome assembly and sequencing technology have made whole genome
sequence (WGS) data and reference genomes accessible to study polyploid species …
sequence (WGS) data and reference genomes accessible to study polyploid species …
Dynamics of accessible chromatin regions and subgenome dominance in octoploid strawberry
Subgenome dominance has been reported in diverse allopolyploid species, where genes
from one subgenome are preferentially retained and are more highly expressed than those …
from one subgenome are preferentially retained and are more highly expressed than those …
Advances in genomics and genome editing for improving strawberry (Fragaria ×ananassa)
K Vondracek, F Altpeter, T Liu, S Lee - Frontiers in Genetics, 2024 - frontiersin.org
The cultivated strawberry, Fragaria× ananassa, is a recently domesticated fruit species of
economic interest worldwide. As such, there is significant interest in continuous varietal …
economic interest worldwide. As such, there is significant interest in continuous varietal …
Little evidence for homoeologous gene conversion and homoeologous exchange events in Gossypium allopolyploids
Premise A complicating factor in analyzing allopolyploid genomes is the possibility of
physical interactions between homoeologous chromosomes during meiosis, resulting in …
physical interactions between homoeologous chromosomes during meiosis, resulting in …
On the origin of strawberries
A Liston - Nature Plants, 2023 - nature.com
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Genomic data provides insights into the evolutionary history and adaptive differentiation of two tetraploid strawberries
H Lin, L Chen, C Cai, J Ma, J Li, TL Ashman… - Horticulture …, 2024 - academic.oup.com
Over the decades, evolutionists and ecologists have shown intense interest in the role of
polyploidization in plant evolution. Without clear knowledge of the diploid ancestor (s) of …
polyploidization in plant evolution. Without clear knowledge of the diploid ancestor (s) of …
Exploration of a European-centered strawberry diversity panel provides markers and candidate genes for the control of fruit quality traits
A Prohaska, P Rey-Serra, J Petit, A Petit… - Horticulture …, 2024 - academic.oup.com
Fruit quality traits are major breeding targets in cultivated strawberry (Fragaria× ananassa).
Taking into account the requirements of both growers and consumers when selecting high …
Taking into account the requirements of both growers and consumers when selecting high …
Subgenome phasing for complex allopolyploidy: case-based benchmarking and recommendations
RG Zhang, HY Shang, KH Jia… - Briefings in …, 2024 - academic.oup.com
Accurate subgenome phasing is crucial for understanding the origin, evolution and adaptive
potential of polyploid genomes. SubPhaser and WGDI software are two common …
potential of polyploid genomes. SubPhaser and WGDI software are two common …
[PDF][PDF] Phylogenomic inference, divergence-time calibration, and methods for characterizing reticulate evolution
Phylogenomics has enriched our understanding of the Tree of Life. Non-vertical modes of
evolution—such as hybridization/introgression and horizontal gene transfer—deviate from a …
evolution—such as hybridization/introgression and horizontal gene transfer—deviate from a …