Transcriptome and metabolite profiling show that APETALA2a is a major regulator of tomato fruit ripening

R Karlova, FM Rosin, J Busscher-Lange… - The Plant …, 2011 - academic.oup.com
Fruit ripening in tomato (Solanum lycopersicum) requires the coordination of both
developmental cues as well as the plant hormone ethylene. Although the role of ethylene in …

Immobilization of laccase onto chitosan beads to enhance its capability to degrade synthetic dyes

F Zheng, BK Cui, XJ Wu, G Meng, HX Liu… - International …, 2016 - Elsevier
Loss in activity and denaturation remain key challenges to the potential use of laccase in
industrial applications. One of the most important aims of enzyme technology is to enhance …

Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom

SR Smith, CL Dupont, JK McCarthy… - Nature …, 2019 - nature.com
Diatoms outcompete other phytoplankton for nitrate, yet little is known about the
mechanisms underpinning this ability. Genomes and genome-enabled studies have shown …

TagFinder for the quantitative analysis of gas chromatography—mass spectrometry (GC-MS)-based metabolite profiling experiments

A Luedemann, K Strassburg, A Erban, J Kopka - Bioinformatics, 2008 - academic.oup.com
Abstract Motivation: Typical GC-MS-based metabolite profiling experiments may comprise
hundreds of chromatogram files, which each contain up to 1000 mass spectral tags (MSTs) …

Plant and microbial sciences as key drivers in the development of metabolomics research

A Aharoni, R Goodacre… - Proceedings of the …, 2023 - National Acad Sciences
This year marks the 25th anniversary of the coinage of the term metabolome [SG Oliver et
al., Trends Biotech. 16, 373–378 (1998)]. As the field rapidly advances, it is important to take …

A liquid chromatography-mass spectrometry-based metabolome database for tomato

S Moco, RJ Bino, O Vorst, HA Verhoeven… - Plant …, 2006 - academic.oup.com
For the description of the metabolome of an organism, the development of common
metabolite databases is of utmost importance. Here we present the Metabolome Tomato …

Plant metabolomics: from holistic hope, to hype, to hot topic

RD Hall - New phytologist, 2006 - Wiley Online Library
In a short time, plant metabolomics has gone from being just an ambitious concept to being
a rapidly growing, valuable technology applied in the stride to gain a more global picture of …

Metabolic footprinting and systems biology: the medium is the message

DB Kell, M Brown, HM Davey, WB Dunn… - Nature reviews …, 2005 - nature.com
One element of classical systems analysis treats a system as a black or grey box, the inner
structure and behaviour of which can be analysed and modelled by varying an internal or …

Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation

AE Allen, J LaRoche, U Maheswari… - Proceedings of the …, 2008 - National Acad Sciences
Marine primary productivity is iron (Fe)-limited in vast regions of the contemporary oceans,
most notably the high nutrient low chlorophyll (HNLC) regions. Diatoms often form large …

Quantitative metabolomics based on gas chromatography mass spectrometry: status and perspectives

MM Koek, RH Jellema, J van der Greef, AC Tas… - Metabolomics, 2011 - Springer
Metabolomics involves the unbiased quantitative and qualitative analysis of the complete set
of metabolites present in cells, body fluids and tissues (the metabolome). By analyzing …