[HTML][HTML] Targeting RNA structures with small molecules

JL Childs-Disney, X Yang, QMR Gibaut… - Nature Reviews Drug …, 2022 - nature.com
RNA adopts 3D structures that confer varied functional roles in human biology and
dysfunction in disease. Approaches to therapeutically target RNA structures with small …

[HTML][HTML] Advances in the development of shape similarity methods and their application in drug discovery

A Kumar, KYJ Zhang - Frontiers in chemistry, 2018 - frontiersin.org
Molecular similarity is a key concept in drug discovery. It is based on the assumption that
structurally similar molecules frequently have similar properties. Assessment of similarity …

RNA phase transitions in repeat expansion disorders

A Jain, RD Vale - Nature, 2017 - nature.com
Expansions of short nucleotide repeats produce several neurological and neuromuscular
disorders including Huntington disease, muscular dystrophy, and amyotrophic lateral …

Sequence-based design of bioactive small molecules that target precursor microRNAs

SP Velagapudi, SM Gallo, MD Disney - Nature chemical biology, 2014 - nature.com
Oligonucleotides are designed to target RNA using base pairing rules, but they can be
hampered by poor cellular delivery and nonspecific stimulation of the immune system. Small …

Inforna 2.0: a platform for the sequence-based design of small molecules targeting structured RNAs

MD Disney, AM Winkelsas, SP Velagapudi… - ACS chemical …, 2016 - ACS Publications
The development of small molecules that target RNA is challenging yet, if successful, could
advance the development of chemical probes to study RNA function or precision …

Small molecule inhibition of microRNA-210 reprograms an oncogenic hypoxic circuit

MG Costales, CL Haga, SP Velagapudi… - Journal of the …, 2017 - ACS Publications
A hypoxic state is critical to the metastatic and invasive characteristics of cancer. Numerous
pathways play critical roles in cancer maintenance, many of which include noncoding RNAs …

MBNL proteins and their target RNAs, interaction and splicing regulation

P Konieczny, E Stepniak-Konieczna… - Nucleic acids …, 2014 - academic.oup.com
Muscleblind-like (MBNL) proteins are key regulators of precursor and mature mRNA
metabolism in mammals. Based on published and novel data, we explore models of tissue …

Targeting RNA in mammalian systems with small molecules

A Donlic, AE Hargrove - Wiley Interdisciplinary Reviews: RNA, 2018 - Wiley Online Library
The recognition of RNA functions beyond canonical protein synthesis has challenged the
central dogma of molecular biology. Indeed, RNA is now known to directly regulate many …

Hierarchical virtual screening approaches in small molecule drug discovery

A Kumar, KYJ Zhang - Methods, 2015 - Elsevier
Virtual screening has played a significant role in the discovery of small molecule inhibitors of
therapeutic targets in last two decades. Various ligand and structure-based virtual screening …

[HTML][HTML] Short tandem repeat expansions and RNA-mediated pathogenesis in myotonic dystrophy

ŁJ Sznajder, MS Swanson - International Journal of Molecular Sciences, 2019 - mdpi.com
Short tandem repeat (STR) or microsatellite, expansions underlie more than 50 hereditary
neurological, neuromuscular and other diseases, including myotonic dystrophy types 1 …